| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is yjcG [C]
Identifier: 222526880
GI number: 222526880
Start: 4555683
End: 4557869
Strand: Direct
Name: yjcG [C]
Synonym: Chy400_3657
Alternate gene names: 222526880
Gene position: 4555683-4557869 (Clockwise)
Preceding gene: 222526879
Following gene: 222526881
Centisome position: 86.46
GC content: 57.29
Gene sequence:
>2187_bases ATGAGCGCGCAATTCTGGCTTGGTCTGTTTCAACTTTTTCTGGTCGTCGGTGGCGCGCTGGCCGTGTCACTTTTCATCAT TGATCGGCTCTTCCCTCCGGTACGGCAGACGACAGGATCAGATACGGCTAATGTCCGCAGACTGCGGATTGGCCCCGCTT CAACCGCTGTCCCTCCTCCACTACGCTGGCCGCTGGCACCGGCCTGGTTGCCGCAATACTGGCAGGAAAACCTGCGTCTG GTCGGGCCACTCCTCGTCATCTGGTTGCTGAGCTTTGTGCTACCGGTTGTGCTCTCAGCACCACTCAACCAGATCAGCAT TCTGACCGGCTTCCCCCTCGGCTATTACATGAGTGCGCAGGGAACGCTCATCTGTTTCGTTGTGCTCATCTTCGTCTACA ACTGGCGCATGCACATCCTTGATCGGCGGTACGGCGTCGATCCTCCCGAAACGCCAGATGCACAGCAGATACGCCGGCGC TACTCGCTCCGCTATCTGGGATTCACCATCGGATTGCTGGTTCTGTTGATCGTCTTTATCATTCTTGAGACACAGTTTCG CCTGCCATCGTTTCTCATCGATTGGAGCTTTCTTGCCCTGACGATTGGTCTCTACGCTGTGATCGGCATTCGTTCACGCG CCGATACCCTCGATGCCTATTATGTTGCCGAGCGGAAAGTTCCCGGTATTCTCAACGGCCTGGCCACCGGTTCAGACTGG ATGAGCGCAGCGTCGTTTATCAGTATGGCCGGCGCCCTCTATCTTTTGGGGTTTGAAGGGCTGGCCTATATCACCGGTTG GACGGGTGGCTACGTGTTGCTGGTATTGCTCCTTGCCCCCTATCTACGCAAATTCGGTCAGTACACACTCGTCGATTTTA TTGGTGCCCGCTATCCGGGCGCCGGCGCACGAGTGATCGCTGCCGTCCTCAGCATCATCATCTGCTTCACCTATGTCACG GCACAGGTAACGGGGATCGGGATCATTATGAGCCGGTTTCTCGGTCTCAACTACATGGTCGGCGTGATCGTTGGCCTGGC AGCCGTCCTGCTCTGTTCGTACCTTGGTGGGATGAAGGCGATCACCTGGACGCAAGGCGTGCAGGGGATTATTCTGGTGT TTGCCTACCTGGTGCCGGTGACCTGGCTGGCCTTCAAGCTGACCGGCGTAGCCTTGCCGCAGGTTATGTACGGTGAAGCC CTCAGCAATATTGATCGTCTGGAACAGGCGCAGGGGCTTGCGAGCTATGTTGCCCCCTTCAACGACTGGTCAATCTGGAA CTATCTGGCCCTTTCGCTCTGTTTGATGCTGGGAACAGCCGGCATGCCGCACATTCTGGTGCGCTTCTACACCGTACCCA CTGTCCGTGACAGTCGCAGTAGTGTAGCCTGGGCACTGGTCTGGATTTGTGTGCTCTATCTGACTGCACCCGCCTACGCT GCCTTCTCACGCTGGGAGATTTTAAGCTCGGTGGTGGGGAGACCGGTTGCCGGGTTGCCTGAATGGACCAGCCGGTGGGC AAGTACCGGTCTGCTCAAGATTGCCGATGCCCCTGAGGTGGGTGGCAATGGTGATGGTATTTTGCAGTACCACGAATTAC AGATCGACCAGGATTTGGTGGTGTTATCTACGCCGGAGATTGCCGAACTACCGTCTACCGTCGTGGCATTAGTTGCTGCC GGCGGTATGGCCGCAGCGCTCAGTACTGCCGATGGTCTGTTGATGGTGATCGCCTCGGCAACGGTACACGACATCTACCA TCGTACCCTCAACCCACGCGCCTCTTCCCGTGAACGCCTGTTGCTTGGCCGACTGGCGATCCTGGTCGTCGCAATCCTGG CGGCACTGACGGCATTGCAACGGTTGGCCATTATCGTACAACTGGTGGCCTGGGCCTTTTCGTTCGCCGCAGCGACGATC TTTCCGGTGCTGGTGCTGGGCATTTTCTGGAAGCGCACGAACAGTCGTGGCGCAGTGGCCGGTATGATCAGCGGCTTCCT GGTAACGGCCAGTTATATGGCGATTACGTACATTCTCCCCGAATGGACACTCTTTGGCATTTCCAGCTCGGCAGCCGGTA TCTTCGGTCTCCCCGTCAATTTCCTGGTCACCTGGCTGGTCAGCCGGTATGGGCCACCACCTGATCCAGAAGTAACCGCA CTGGTGGATTACGTGCGCTATCCGTGA
Upstream 100 bases:
>100_bases TCGGGAAAGGCGCACGCTTCATCTTTACCCTACCGCTGGCACCGCAGATGGCGTTCGTGCGCGTAGACCATCCCGTCACG GTTGAGGCAGTTGACACGCT
Downstream 100 bases:
>100_bases TCACGCTGCGGAGATGACAGGTTGGCGTAGAACGGCGGGTTAAAGCGTCGGGGGTTCTGCGGAGCGGCGGGTTAACACCC TGCCTCAATTCGTGGAAGGC
Product: SSS sodium solute transporter superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 728; Mature: 727
Protein sequence:
>728_residues MSAQFWLGLFQLFLVVGGALAVSLFIIDRLFPPVRQTTGSDTANVRRLRIGPASTAVPPPLRWPLAPAWLPQYWQENLRL VGPLLVIWLLSFVLPVVLSAPLNQISILTGFPLGYYMSAQGTLICFVVLIFVYNWRMHILDRRYGVDPPETPDAQQIRRR YSLRYLGFTIGLLVLLIVFIILETQFRLPSFLIDWSFLALTIGLYAVIGIRSRADTLDAYYVAERKVPGILNGLATGSDW MSAASFISMAGALYLLGFEGLAYITGWTGGYVLLVLLLAPYLRKFGQYTLVDFIGARYPGAGARVIAAVLSIIICFTYVT AQVTGIGIIMSRFLGLNYMVGVIVGLAAVLLCSYLGGMKAITWTQGVQGIILVFAYLVPVTWLAFKLTGVALPQVMYGEA LSNIDRLEQAQGLASYVAPFNDWSIWNYLALSLCLMLGTAGMPHILVRFYTVPTVRDSRSSVAWALVWICVLYLTAPAYA AFSRWEILSSVVGRPVAGLPEWTSRWASTGLLKIADAPEVGGNGDGILQYHELQIDQDLVVLSTPEIAELPSTVVALVAA GGMAAALSTADGLLMVIASATVHDIYHRTLNPRASSRERLLLGRLAILVVAILAALTALQRLAIIVQLVAWAFSFAAATI FPVLVLGIFWKRTNSRGAVAGMISGFLVTASYMAITYILPEWTLFGISSSAAGIFGLPVNFLVTWLVSRYGPPPDPEVTA LVDYVRYP
Sequences:
>Translated_728_residues MSAQFWLGLFQLFLVVGGALAVSLFIIDRLFPPVRQTTGSDTANVRRLRIGPASTAVPPPLRWPLAPAWLPQYWQENLRL VGPLLVIWLLSFVLPVVLSAPLNQISILTGFPLGYYMSAQGTLICFVVLIFVYNWRMHILDRRYGVDPPETPDAQQIRRR YSLRYLGFTIGLLVLLIVFIILETQFRLPSFLIDWSFLALTIGLYAVIGIRSRADTLDAYYVAERKVPGILNGLATGSDW MSAASFISMAGALYLLGFEGLAYITGWTGGYVLLVLLLAPYLRKFGQYTLVDFIGARYPGAGARVIAAVLSIIICFTYVT AQVTGIGIIMSRFLGLNYMVGVIVGLAAVLLCSYLGGMKAITWTQGVQGIILVFAYLVPVTWLAFKLTGVALPQVMYGEA LSNIDRLEQAQGLASYVAPFNDWSIWNYLALSLCLMLGTAGMPHILVRFYTVPTVRDSRSSVAWALVWICVLYLTAPAYA AFSRWEILSSVVGRPVAGLPEWTSRWASTGLLKIADAPEVGGNGDGILQYHELQIDQDLVVLSTPEIAELPSTVVALVAA GGMAAALSTADGLLMVIASATVHDIYHRTLNPRASSRERLLLGRLAILVVAILAALTALQRLAIIVQLVAWAFSFAAATI FPVLVLGIFWKRTNSRGAVAGMISGFLVTASYMAITYILPEWTLFGISSSAAGIFGLPVNFLVTWLVSRYGPPPDPEVTA LVDYVRYP >Mature_727_residues SAQFWLGLFQLFLVVGGALAVSLFIIDRLFPPVRQTTGSDTANVRRLRIGPASTAVPPPLRWPLAPAWLPQYWQENLRLV GPLLVIWLLSFVLPVVLSAPLNQISILTGFPLGYYMSAQGTLICFVVLIFVYNWRMHILDRRYGVDPPETPDAQQIRRRY SLRYLGFTIGLLVLLIVFIILETQFRLPSFLIDWSFLALTIGLYAVIGIRSRADTLDAYYVAERKVPGILNGLATGSDWM SAASFISMAGALYLLGFEGLAYITGWTGGYVLLVLLLAPYLRKFGQYTLVDFIGARYPGAGARVIAAVLSIIICFTYVTA QVTGIGIIMSRFLGLNYMVGVIVGLAAVLLCSYLGGMKAITWTQGVQGIILVFAYLVPVTWLAFKLTGVALPQVMYGEAL SNIDRLEQAQGLASYVAPFNDWSIWNYLALSLCLMLGTAGMPHILVRFYTVPTVRDSRSSVAWALVWICVLYLTAPAYAA FSRWEILSSVVGRPVAGLPEWTSRWASTGLLKIADAPEVGGNGDGILQYHELQIDQDLVVLSTPEIAELPSTVVALVAAG GMAAALSTADGLLMVIASATVHDIYHRTLNPRASSRERLLLGRLAILVVAILAALTALQRLAIIVQLVAWAFSFAAATIF PVLVLGIFWKRTNSRGAVAGMISGFLVTASYMAITYILPEWTLFGISSSAAGIFGLPVNFLVTWLVSRYGPPPDPEVTAL VDYVRYP
Specific function: Unknown
COG id: COG4147
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI310128183, Length=539, Percent_Identity=25.0463821892393, Blast_Score=97, Evalue=8e-20, Organism=Escherichia coli, GI1790503, Length=484, Percent_Identity=29.1322314049587, Blast_Score=175, Evalue=8e-45, Organism=Escherichia coli, GI1787251, Length=470, Percent_Identity=26.8085106382979, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI87082237, Length=477, Percent_Identity=22.4318658280922, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR019899 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 79515; Mature: 79384
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQFWLGLFQLFLVVGGALAVSLFIIDRLFPPVRQTTGSDTANVRRLRIGPASTAVPPP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCC LRWPLAPAWLPQYWQENLRLVGPLLVIWLLSFVLPVVLSAPLNQISILTGFPLGYYMSAQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHEEECCC GTLICFVVLIFVYNWRMHILDRRYGVDPPETPDAQQIRRRYSLRYLGFTIGLLVLLIVFI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ILETQFRLPSFLIDWSFLALTIGLYAVIGIRSRADTLDAYYVAERKVPGILNGLATGSDW HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCHHH MSAASFISMAGALYLLGFEGLAYITGWTGGYVLLVLLLAPYLRKFGQYTLVDFIGARYPG HHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC AGARVIAAVLSIIICFTYVTAQVTGIGIIMSRFLGLNYMVGVIVGLAAVLLCSYLGGMKA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ITWTQGVQGIILVFAYLVPVTWLAFKLTGVALPQVMYGEALSNIDRLEQAQGLASYVAPF EHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NDWSIWNYLALSLCLMLGTAGMPHILVRFYTVPTVRDSRSSVAWALVWICVLYLTAPAYA CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AFSRWEILSSVVGRPVAGLPEWTSRWASTGLLKIADAPEVGGNGDGILQYHELQIDQDLV HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEECCCCEE VLSTPEIAELPSTVVALVAAGGMAAALSTADGLLMVIASATVHDIYHRTLNPRASSRERL EECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH LLGRLAILVVAILAALTALQRLAIIVQLVAWAFSFAAATIFPVLVLGIFWKRTNSRGAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GMISGFLVTASYMAITYILPEWTLFGISSSAAGIFGLPVNFLVTWLVSRYGPPPDPEVTA HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCHHHHHHHHHHHCCCCCCCHHHH LVDYVRYP HHHHHCCC >Mature Secondary Structure SAQFWLGLFQLFLVVGGALAVSLFIIDRLFPPVRQTTGSDTANVRRLRIGPASTAVPPP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCC LRWPLAPAWLPQYWQENLRLVGPLLVIWLLSFVLPVVLSAPLNQISILTGFPLGYYMSAQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHEEECCC GTLICFVVLIFVYNWRMHILDRRYGVDPPETPDAQQIRRRYSLRYLGFTIGLLVLLIVFI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ILETQFRLPSFLIDWSFLALTIGLYAVIGIRSRADTLDAYYVAERKVPGILNGLATGSDW HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCHHH MSAASFISMAGALYLLGFEGLAYITGWTGGYVLLVLLLAPYLRKFGQYTLVDFIGARYPG HHHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC AGARVIAAVLSIIICFTYVTAQVTGIGIIMSRFLGLNYMVGVIVGLAAVLLCSYLGGMKA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ITWTQGVQGIILVFAYLVPVTWLAFKLTGVALPQVMYGEALSNIDRLEQAQGLASYVAPF EHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NDWSIWNYLALSLCLMLGTAGMPHILVRFYTVPTVRDSRSSVAWALVWICVLYLTAPAYA CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AFSRWEILSSVVGRPVAGLPEWTSRWASTGLLKIADAPEVGGNGDGILQYHELQIDQDLV HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEECCCCEE VLSTPEIAELPSTVVALVAAGGMAAALSTADGLLMVIASATVHDIYHRTLNPRASSRERL EECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH LLGRLAILVVAILAALTALQRLAIIVQLVAWAFSFAAATIFPVLVLGIFWKRTNSRGAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GMISGFLVTASYMAITYILPEWTLFGISSSAAGIFGLPVNFLVTWLVSRYGPPPDPEVTA HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCHHHHHHHHHHHCCCCCCCHHHH LVDYVRYP HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1356967 [H]