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The map label for this gene is ypdF [C]

Identifier: 222526841

GI number: 222526841

Start: 4500488

End: 4501597

Strand: Reverse

Name: ypdF [C]

Synonym: Chy400_3617

Alternate gene names: 222526841

Gene position: 4501597-4500488 (Counterclockwise)

Preceding gene: 222526842

Following gene: 222526839

Centisome position: 85.44

GC content: 60.27

Gene sequence:

>1110_bases
ATGTCTGCACGTCTGTCCCGCCTGGTAGAGCGTCTGGTTGCCGCAGATTACGCCGGTGCCGCCTTGATGCCGGCTACCAA
TCTCGCCTATCTCACCAGCCTGCGCTTTCATCCCGGAAAACGGCTCACCCTGCTCTTGCTACCGGCGAACGGTAACCCAC
CGGTTATGGTGCTGCCCCAGCTCGAACTCGAACGGGTGCGGGCAAGTGTTCCTTTCGCAACCCAATTCTTTGCCTGGAGT
GATGCCGAAGGGCCATTGAAGGCATTGGCAGACGGCATCACAGCCGCTTTTGGCGCCACCGTACCAGATAAACCGTTGGC
CGTTGAGCACACCGTCATGCGGGTGATGGAGCTGCGGGCATTGGAGGCTGTTGCGCCCGGTCTGCGCACGGCTGATCTTG
ATCCGCTACTGAGTGAACTACGGATGGTTAAAGATGCCGAAGAGCTGGCGCTTATGGAGCGCGCCGTAGCGATTGTCGAG
CAGGCATTGCATACCTTCATCAGACAGATTCGTGCCGGACTGAGCGAGCGAACCCTCTCGCGTATGCTGAGCGACGCCAT
CCTGGCAGCCGGTGCCGACGGCGAGAGCTTCGCGAATATGGTAGCCAGTGGTCCCAATGCTGCCAATCCTCACCACGAAA
ACAGTGATCGCATACTGCAAACCGGTGATCTGGTGATTATCGACTGCGGTGCCGTCTACCAGGGTTACCATTCAGACATT
ACCCGCACGATAGCGATTGGCGATCCCGGCCCCATGGCCCGCCACGTCTACGACATCGTGCTGGCAGCGAACACGGCTGG
CCGCAACGCCTGCCGGCCCGGCGTGAGCGGCGCCACGATTGACGCCGCGGCGCGCAAGGTGATCGAGGATGCCGGTTACG
GGGCAGCATTTGTTCACCGCACCGGCCATGGCCTCGGCCTGGAAACCCACGAACTGCCCAACATTGTTGCCGGCAGTGAT
GCACCATTGTTGCCAGGCACCACCTTCACCGTTGAACCAGGCATCTACCTGCCCGGTCAGTTCGGTGTGCGTATAGAAGA
TGATGTGGTCATCACCCCCGATGGTAGTCGCTCACTGACCACCTTCCCCCGTGAGCTGATTGTGGTGTAG

Upstream 100 bases:

>100_bases
CCGGTCAACGAGATGCTGTACGCTATCTTGCTGCCGCAAGAATTAGCCGCCCGCGGCCAACTACCGACCCAACGTTGAAT
GCGCTAGAGAGGAGCGCCGC

Downstream 100 bases:

>100_bases
AGTGGATGGATTGACAGCCAGCGGCAGTACACTGAACTGTATGCCGAAGGGGCACCCACAGGTGGTGCCCTGTGCAATTT
CTCTGTATGAATGTTCTTAA

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSARLSRLVERLVAADYAGAALMPATNLAYLTSLRFHPGKRLTLLLLPANGNPPVMVLPQLELERVRASVPFATQFFAWS
DAEGPLKALADGITAAFGATVPDKPLAVEHTVMRVMELRALEAVAPGLRTADLDPLLSELRMVKDAEELALMERAVAIVE
QALHTFIRQIRAGLSERTLSRMLSDAILAAGADGESFANMVASGPNAANPHHENSDRILQTGDLVIIDCGAVYQGYHSDI
TRTIAIGDPGPMARHVYDIVLAANTAGRNACRPGVSGATIDAAARKVIEDAGYGAAFVHRTGHGLGLETHELPNIVAGSD
APLLPGTTFTVEPGIYLPGQFGVRIEDDVVITPDGSRSLTTFPRELIVV

Sequences:

>Translated_369_residues
MSARLSRLVERLVAADYAGAALMPATNLAYLTSLRFHPGKRLTLLLLPANGNPPVMVLPQLELERVRASVPFATQFFAWS
DAEGPLKALADGITAAFGATVPDKPLAVEHTVMRVMELRALEAVAPGLRTADLDPLLSELRMVKDAEELALMERAVAIVE
QALHTFIRQIRAGLSERTLSRMLSDAILAAGADGESFANMVASGPNAANPHHENSDRILQTGDLVIIDCGAVYQGYHSDI
TRTIAIGDPGPMARHVYDIVLAANTAGRNACRPGVSGATIDAAARKVIEDAGYGAAFVHRTGHGLGLETHELPNIVAGSD
APLLPGTTFTVEPGIYLPGQFGVRIEDDVVITPDGSRSLTTFPRELIVV
>Mature_368_residues
SARLSRLVERLVAADYAGAALMPATNLAYLTSLRFHPGKRLTLLLLPANGNPPVMVLPQLELERVRASVPFATQFFAWSD
AEGPLKALADGITAAFGATVPDKPLAVEHTVMRVMELRALEAVAPGLRTADLDPLLSELRMVKDAEELALMERAVAIVEQ
ALHTFIRQIRAGLSERTLSRMLSDAILAAGADGESFANMVASGPNAANPHHENSDRILQTGDLVIIDCGAVYQGYHSDIT
RTIAIGDPGPMARHVYDIVLAANTAGRNACRPGVSGATIDAAARKVIEDAGYGAAFVHRTGHGLGLETHELPNIVAGSDA
PLLPGTTFTVEPGIYLPGQFGVRIEDDVVITPDGSRSLTTFPRELIVV

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=261, Percent_Identity=29.1187739463602, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI264681563, Length=275, Percent_Identity=29.0909090909091, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI93141226, Length=164, Percent_Identity=35.3658536585366, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI149589008, Length=295, Percent_Identity=27.7966101694915, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI260593665, Length=295, Percent_Identity=27.7966101694915, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI264681565, Length=272, Percent_Identity=26.8382352941176, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI40385867, Length=265, Percent_Identity=23.0188679245283, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1788728, Length=234, Percent_Identity=44.017094017094, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1789275, Length=322, Percent_Identity=30.7453416149068, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1786364, Length=238, Percent_Identity=25.6302521008403, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508215, Length=302, Percent_Identity=29.4701986754967, Blast_Score=92, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320922, Length=249, Percent_Identity=26.9076305220884, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6322999, Length=169, Percent_Identity=34.9112426035503, Blast_Score=76, Evalue=8e-15,
Organism=Drosophila melanogaster, GI19920384, Length=255, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21357079, Length=296, Percent_Identity=27.7027027027027, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI17137632, Length=168, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 39230; Mature: 39098

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARLSRLVERLVAADYAGAALMPATNLAYLTSLRFHPGKRLTLLLLPANGNPPVMVLPQ
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEECCCCEEEEEEEECCCCCCEEEECC
LELERVRASVPFATQFFAWSDAEGPLKALADGITAAFGATVPDKPLAVEHTVMRVMELRA
HHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LEAVAPGLRTADLDPLLSELRMVKDAEELALMERAVAIVEQALHTFIRQIRAGLSERTLS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RMLSDAILAAGADGESFANMVASGPNAANPHHENSDRILQTGDLVIIDCGAVYQGYHSDI
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEECCHHHCCHHCCC
TRTIAIGDPGPMARHVYDIVLAANTAGRNACRPGVSGATIDAAARKVIEDAGYGAAFVHR
EEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
TGHGLGLETHELPNIVAGSDAPLLPGTTFTVEPGIYLPGQFGVRIEDDVVITPDGSRSLT
CCCCCCCCHHHCCCEECCCCCCCCCCCEEEECCCEEECCCCCCEECCCEEECCCCCCCHH
TFPRELIVV
HCCHHHCCC
>Mature Secondary Structure 
SARLSRLVERLVAADYAGAALMPATNLAYLTSLRFHPGKRLTLLLLPANGNPPVMVLPQ
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEECCCCEEEEEEEECCCCCCEEEECC
LELERVRASVPFATQFFAWSDAEGPLKALADGITAAFGATVPDKPLAVEHTVMRVMELRA
HHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LEAVAPGLRTADLDPLLSELRMVKDAEELALMERAVAIVEQALHTFIRQIRAGLSERTLS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RMLSDAILAAGADGESFANMVASGPNAANPHHENSDRILQTGDLVIIDCGAVYQGYHSDI
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEECCHHHCCHHCCC
TRTIAIGDPGPMARHVYDIVLAANTAGRNACRPGVSGATIDAAARKVIEDAGYGAAFVHR
EEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
TGHGLGLETHELPNIVAGSDAPLLPGTTFTVEPGIYLPGQFGVRIEDDVVITPDGSRSLT
CCCCCCCCHHHCCCEECCCCCCCCCCCEEEECCCEEECCCCCCEECCCEEECCCCCCCHH
TFPRELIVV
HCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA