Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
---|---|
Accession | NC_012032 |
Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is muT4 [H]
Identifier: 222526809
GI number: 222526809
Start: 4459553
End: 4460011
Strand: Direct
Name: muT4 [H]
Synonym: Chy400_3583
Alternate gene names: 222526809
Gene position: 4459553-4460011 (Clockwise)
Preceding gene: 222526808
Following gene: 222526810
Centisome position: 84.64
GC content: 58.61
Gene sequence:
>459_bases ATGACTTCACGCCGTTCACTTTCGCATCGCACAGCCTATTCGGCGGGCGGTGTTATTTATCGGATTGTTGCCACGCAGAT CGAAGTGGCACTGATTGCAACCGATCGTGGTGAGCGTTGGGGGCTGCCCAAAGGGCACGTAAACCGGGGCGAAACCGCGG AGGCTGCGGCTGTGCGCGAAATAGCCGAAGAGACCGGGCTTGAGGGCGTTGTGGAGCGGCATCTGGCGACAATTGAGTAC TGGTTTCGCTCCGGTCATGGCCGGGTCCACAAGTATGTCGATCTGTTTCTGCTCCGCTATGAACGGGGTGAGGTGCGACC ACAGATCGGCGAAGTTGACGATGCTCGCTGGTTCCCGCTCGATGAAGCGCTCCAGCGGGTTTCATTCGAGCGGGAACGTG ATGTGCTGTTGTTGGCCCGGCAGGCACTCTGTGATGCGAGCGGTAATGCAAAGGTATGA
Upstream 100 bases:
>100_bases GAGTCGGCGGATGTGGCTCGCGAGCGGATTCAGTACTCGATAGATCGCTACTGGGATATGCGCGCCGGTCGCGTGCTCAA ACGTGCCTGATCGGATGGTC
Downstream 100 bases:
>100_bases TCTACACTATCGAAGTGCAACTGGATGAAGGTATCACCGCCGATAGCGAGCTGGTTGAACGCGCTGCGGCGGCAGTGCTG GCCGCCGAGCAGATGCCGGA
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MTSRRSLSHRTAYSAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVREIAEETGLEGVVERHLATIEY WFRSGHGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPLDEALQRVSFERERDVLLLARQALCDASGNAKV
Sequences:
>Translated_152_residues MTSRRSLSHRTAYSAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVREIAEETGLEGVVERHLATIEY WFRSGHGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPLDEALQRVSFERERDVLLLARQALCDASGNAKV >Mature_151_residues TSRRSLSHRTAYSAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVREIAEETGLEGVVERHLATIEYW FRSGHGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPLDEALQRVSFERERDVLLLARQALCDASGNAKV
Specific function: May be involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8- oxoguanine, 8-oxo-dGTP) from DNA and the nucleotide pool. In vitro has dATPase rather than 8-oxo-dGTPase activity [H]
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: NA
Molecular weight: Translated: 17189; Mature: 17057
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRRSLSHRTAYSAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVRE CCCCCCCHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH IAEETGLEGVVERHLATIEYWFRSGHGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPL HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH DEALQRVSFERERDVLLLARQALCDASGNAKV HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TSRRSLSHRTAYSAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVRE CCCCCCHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH IAEETGLEGVVERHLATIEYWFRSGHGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPL HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH DEALQRVSFERERDVLLLARQALCDASGNAKV HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]