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The map label for this gene is yhdY [H]

Identifier: 222526723

GI number: 222526723

Start: 4353458

End: 4354690

Strand: Direct

Name: yhdY [H]

Synonym: Chy400_3496

Alternate gene names: 222526723

Gene position: 4353458-4354690 (Clockwise)

Preceding gene: 222526722

Following gene: 222526724

Centisome position: 82.62

GC content: 56.53

Gene sequence:

>1233_bases
GTGGCTACTGAAGTTAGTCGTCCAACTTCGCGCCGTGCACCGCGTCAGCAGATTGGTCTGATCGAGTGGTTGCGCAAAAA
TCTCTTTTCAACCTGGTACAACGCGATTATTACTATCGTCCTCCTGTACATTGTTGTCCAGGCCGTAACCAGTTTTGTTT
CCTGGATGGTGACGGCTCCTGGCTGGCCGGCTGCGTTCACGAACATTAAGCTCTTACTTACCTGGACGTATCCGGTCGAT
CAGCTCTGGCGACCGCAGGCAGCTATGGCGCTGGTCTTGCTGCTGCTGGGATTGAGTGCCGGTGTGTGGGGTGGAACCGT
GCGAATGGTTGCCTTTGGGGCAGCCGCAATCAGTGTTGGGATCGGTTTTGCCGCCTTTACCTTCCCCGATTTGCCGGATC
AGACCTCACTGCCCGGTTGGCTCTTTATGTTTCTCTGTGCCGGGTTACTGGTGGGTAGTGATCAACTGGCACGTCGGCTA
GGCAAACGTCTCCGTTGGCCACTTATTATCGCCTGGCTACTCTCATACCCGGCGGTTATCCTGATTTTGCGCGGTGGTCT
TGGCCTGCCAATCGTTGAGACAAAGCTGTGGGGCGGTTTGCTTTTGACGTTGTTGCTGGCGATCAGTGGTATCGTGCTCT
CGTTTCCGCTAGGGGTGTTGCTGGCATTGGGGCGCCGGAGTTCATTGCCGGTTATTCGCGTGTTTTGCGTGCTCTATATT
GAGCTGATCCGTGGTGTGCCACTGGTGACAGTGCTCTTTATGGGTGCCCTCTTGCTGCCGCTCTTCATCCCCGGTGGCGA
GAGTATTGATGCGCTGGTACGGGCAATTGTCGCGGTGACCCTGTTTAGCGCAGCCTACCTGGCCGAAAATGTGCGTGGTG
GCTTGCAGTCGATTCCCAAAGGGCAGATCGAAGCAGCGCGGGCCCTTGGTCTAAATGTATTTCAGACCACATTGCTCATT
ACGTTGCCGCAGGCGCTGCGCGCGGTGGTGCCGGTGCTGGTCGGTCAGTTCATCGCCCTGTTCAAAGACACCTCACTGGT
CGTGATCATCGGTCTGGTCGATCTCCTCGGCGCAGCGCAAAATATCGTCGGTCAACCGCAGTGGCTCGGTACGCCGGGTG
GGGTCTGGCGCGAGACATTCCTGGTGATCGCTGCTATCTATTGGGTCTTCAGCTTCACCATGTCACGCATCAGTAAGCGC
ATTGAAGACCAGATCGCTCGCAGCCGGCATTGA

Upstream 100 bases:

>100_bases
ATGCTCATGGCCAGTTATCTTTCGGTCAGTTTGCTGACGTCGCTGTTTATGAACTGGTATAACCGTCGCATCCAGCTTGT
CGAGCGATAAGGAGACGCCT

Downstream 100 bases:

>100_bases
TGATGTGCCTCGTGAGAATCGGTTAGCTGCCGTTCTGATGAGCTTTGACATACCTTTTGGATATAAACCCGGTGTGAAAG
GAATATCGTATGAGTGGCAA

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MATEVSRPTSRRAPRQQIGLIEWLRKNLFSTWYNAIITIVLLYIVVQAVTSFVSWMVTAPGWPAAFTNIKLLLTWTYPVD
QLWRPQAAMALVLLLLGLSAGVWGGTVRMVAFGAAAISVGIGFAAFTFPDLPDQTSLPGWLFMFLCAGLLVGSDQLARRL
GKRLRWPLIIAWLLSYPAVILILRGGLGLPIVETKLWGGLLLTLLLAISGIVLSFPLGVLLALGRRSSLPVIRVFCVLYI
ELIRGVPLVTVLFMGALLLPLFIPGGESIDALVRAIVAVTLFSAAYLAENVRGGLQSIPKGQIEAARALGLNVFQTTLLI
TLPQALRAVVPVLVGQFIALFKDTSLVVIIGLVDLLGAAQNIVGQPQWLGTPGGVWRETFLVIAAIYWVFSFTMSRISKR
IEDQIARSRH

Sequences:

>Translated_410_residues
MATEVSRPTSRRAPRQQIGLIEWLRKNLFSTWYNAIITIVLLYIVVQAVTSFVSWMVTAPGWPAAFTNIKLLLTWTYPVD
QLWRPQAAMALVLLLLGLSAGVWGGTVRMVAFGAAAISVGIGFAAFTFPDLPDQTSLPGWLFMFLCAGLLVGSDQLARRL
GKRLRWPLIIAWLLSYPAVILILRGGLGLPIVETKLWGGLLLTLLLAISGIVLSFPLGVLLALGRRSSLPVIRVFCVLYI
ELIRGVPLVTVLFMGALLLPLFIPGGESIDALVRAIVAVTLFSAAYLAENVRGGLQSIPKGQIEAARALGLNVFQTTLLI
TLPQALRAVVPVLVGQFIALFKDTSLVVIIGLVDLLGAAQNIVGQPQWLGTPGGVWRETFLVIAAIYWVFSFTMSRISKR
IEDQIARSRH
>Mature_409_residues
ATEVSRPTSRRAPRQQIGLIEWLRKNLFSTWYNAIITIVLLYIVVQAVTSFVSWMVTAPGWPAAFTNIKLLLTWTYPVDQ
LWRPQAAMALVLLLLGLSAGVWGGTVRMVAFGAAAISVGIGFAAFTFPDLPDQTSLPGWLFMFLCAGLLVGSDQLARRLG
KRLRWPLIIAWLLSYPAVILILRGGLGLPIVETKLWGGLLLTLLLAISGIVLSFPLGVLLALGRRSSLPVIRVFCVLYIE
LIRGVPLVTVLFMGALLLPLFIPGGESIDALVRAIVAVTLFSAAYLAENVRGGLQSIPKGQIEAARALGLNVFQTTLLIT
LPQALRAVVPVLVGQFIALFKDTSLVVIIGLVDLLGAAQNIVGQPQWLGTPGGVWRETFLVIAAIYWVFSFTMSRISKRI
EDQIARSRH

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=407, Percent_Identity=40.04914004914, Blast_Score=248, Evalue=7e-67,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=36.1111111111111, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=36.0576923076923, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786874, Length=174, Percent_Identity=30.4597701149425, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788645, Length=214, Percent_Identity=30.8411214953271, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788646, Length=204, Percent_Identity=32.3529411764706, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=134, Percent_Identity=32.8358208955224, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787087, Length=132, Percent_Identity=34.8484848484849, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44672; Mature: 44541

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATEVSRPTSRRAPRQQIGLIEWLRKNLFSTWYNAIITIVLLYIVVQAVTSFVSWMVTAP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWPAAFTNIKLLLTWTYPVDQLWRPQAAMALVLLLLGLSAGVWGGTVRMVAFGAAAISVG
CCCHHHCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IGFAAFTFPDLPDQTSLPGWLFMFLCAGLLVGSDQLARRLGKRLRWPLIIAWLLSYPAVI
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
LILRGGLGLPIVETKLWGGLLLTLLLAISGIVLSFPLGVLLALGRRSSLPVIRVFCVLYI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELIRGVPLVTVLFMGALLLPLFIPGGESIDALVRAIVAVTLFSAAYLAENVRGGLQSIPK
HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQIEAARALGLNVFQTTLLITLPQALRAVVPVLVGQFIALFKDTSLVVIIGLVDLLGAAQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NIVGQPQWLGTPGGVWRETFLVIAAIYWVFSFTMSRISKRIEDQIARSRH
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATEVSRPTSRRAPRQQIGLIEWLRKNLFSTWYNAIITIVLLYIVVQAVTSFVSWMVTAP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWPAAFTNIKLLLTWTYPVDQLWRPQAAMALVLLLLGLSAGVWGGTVRMVAFGAAAISVG
CCCHHHCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IGFAAFTFPDLPDQTSLPGWLFMFLCAGLLVGSDQLARRLGKRLRWPLIIAWLLSYPAVI
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
LILRGGLGLPIVETKLWGGLLLTLLLAISGIVLSFPLGVLLALGRRSSLPVIRVFCVLYI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELIRGVPLVTVLFMGALLLPLFIPGGESIDALVRAIVAVTLFSAAYLAENVRGGLQSIPK
HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQIEAARALGLNVFQTTLLITLPQALRAVVPVLVGQFIALFKDTSLVVIIGLVDLLGAAQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NIVGQPQWLGTPGGVWRETFLVIAAIYWVFSFTMSRISKRIEDQIARSRH
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]