Click here to switch to the map view.

The map label for this gene is rpe [H]

Identifier: 222526682

GI number: 222526682

Start: 4303876

End: 4304547

Strand: Reverse

Name: rpe [H]

Synonym: Chy400_3452

Alternate gene names: 222526682

Gene position: 4304547-4303876 (Counterclockwise)

Preceding gene: 222526683

Following gene: 222526681

Centisome position: 81.7

GC content: 56.55

Gene sequence:

>672_bases
ATGCGGCTTGCGCCTTCAATTCTCACGGCTGATTTTGCGCGTTTGGGCGAACAGGTTGCCACAGCCTGTGCTGCCGGTAT
TGACTGGATTCATCTCGATGTGATGGATGGCCGGTTTGTGCCGAATATTAGTTTCGGTCCGCTGGTTGTTCGCGCATTGC
GACCACTAGCCGATCAATACGGAGCATTACTCGATGCTCACCTGATGATTGTTGAGCCGGAACGCTACCTGGCCGACTTT
GCCGCTGCCGGTGCCGATCTGATAACCGTCCACGCTGAAGCGACGCCTCACGTGCATCGGGCCGTGCAAATGATCCACAA
TCTGGGCAAAAAAGCCGGGGTTGCTATCAACCCGGCAACTCCTCTCAGCATGGTCGAAGAGCTAATCGATCAGGTAGAAC
TCATCTTGTTAATGACGGTCAATCCCGGTTTTGGCGGACAGACGCTCATTCCGTCGGTACTCGCAAAAGTACAGCGGCTG
CGCACCCTGCTGGGTGATCGTCCGGTGGAGATTATGGTTGATGGTGGGGTAAATCCAACCACCATCGCCGCCTGTGCAAC
TGCCGGTGCGACGGTGGCAGTGGTTGGATCGGCGGTATTTGGCCCGCAACCAATCCCGGATGCCATTAGCGAGCTGCGCA
TAGCGTTGGGTGAGGCCGTTCCGGGTAAGTGA

Upstream 100 bases:

>100_bases
GGTGTGCAGCACGTGACCACCAGCGATTGCGGTACAATAGCCTGGTAGGCTTTCATTCGCGGAAGGCGTGGATTGAAACC
ATCATAACAACAGGGATGCT

Downstream 100 bases:

>100_bases
TGGGCTAAAGGATGCAAGCGGGTCAAAACAGAACCTTACTCTTGTGGACAGGGCATGTGTTGAAATAATGCAGGTGATCT
ATGTATCTGGCCGGTGACAT

Product: Ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRLAPSILTADFARLGEQVATACAAGIDWIHLDVMDGRFVPNISFGPLVVRALRPLADQYGALLDAHLMIVEPERYLADF
AAAGADLITVHAEATPHVHRAVQMIHNLGKKAGVAINPATPLSMVEELIDQVELILLMTVNPGFGGQTLIPSVLAKVQRL
RTLLGDRPVEIMVDGGVNPTTIAACATAGATVAVVGSAVFGPQPIPDAISELRIALGEAVPGK

Sequences:

>Translated_223_residues
MRLAPSILTADFARLGEQVATACAAGIDWIHLDVMDGRFVPNISFGPLVVRALRPLADQYGALLDAHLMIVEPERYLADF
AAAGADLITVHAEATPHVHRAVQMIHNLGKKAGVAINPATPLSMVEELIDQVELILLMTVNPGFGGQTLIPSVLAKVQRL
RTLLGDRPVEIMVDGGVNPTTIAACATAGATVAVVGSAVFGPQPIPDAISELRIALGEAVPGK
>Mature_223_residues
MRLAPSILTADFARLGEQVATACAAGIDWIHLDVMDGRFVPNISFGPLVVRALRPLADQYGALLDAHLMIVEPERYLADF
AAAGADLITVHAEATPHVHRAVQMIHNLGKKAGVAINPATPLSMVEELIDQVELILLMTVNPGFGGQTLIPSVLAKVQRL
RTLLGDRPVEIMVDGGVNPTTIAACATAGATVAVVGSAVFGPQPIPDAISELRIALGEAVPGK

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=40.8256880733945, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=38.9908256880734, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI24307923, Length=171, Percent_Identity=34.5029239766082, Blast_Score=97, Evalue=9e-21,
Organism=Escherichia coli, GI1789788, Length=220, Percent_Identity=48.1818181818182, Blast_Score=202, Evalue=1e-53,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=36.318407960199, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1790754, Length=201, Percent_Identity=31.8407960199005, Blast_Score=97, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=223, Percent_Identity=37.219730941704, Blast_Score=142, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6322341, Length=221, Percent_Identity=41.1764705882353, Blast_Score=162, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=39.622641509434, Blast_Score=158, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23371; Mature: 23371

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00606 B_KETOACYL_SYNTHASE ; PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAPSILTADFARLGEQVATACAAGIDWIHLDVMDGRFVPNISFGPLVVRALRPLADQY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHH
GALLDAHLMIVEPERYLADFAAAGADLITVHAEATPHVHRAVQMIHNLGKKAGVAINPAT
HHHHHHEEEEECCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCHHCCEEECCCC
PLSMVEELIDQVELILLMTVNPGFGGQTLIPSVLAKVQRLRTLLGDRPVEIMVDGGVNPT
HHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
TIAACATAGATVAVVGSAVFGPQPIPDAISELRIALGEAVPGK
HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRLAPSILTADFARLGEQVATACAAGIDWIHLDVMDGRFVPNISFGPLVVRALRPLADQY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHH
GALLDAHLMIVEPERYLADFAAAGADLITVHAEATPHVHRAVQMIHNLGKKAGVAINPAT
HHHHHHEEEEECCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCHHCCEEECCCC
PLSMVEELIDQVELILLMTVNPGFGGQTLIPSVLAKVQRLRTLLGDRPVEIMVDGGVNPT
HHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
TIAACATAGATVAVVGSAVFGPQPIPDAISELRIALGEAVPGK
HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]