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The map label for this gene is ylbK [H]

Identifier: 222526620

GI number: 222526620

Start: 4218680

End: 4219690

Strand: Reverse

Name: ylbK [H]

Synonym: Chy400_3388

Alternate gene names: 222526620

Gene position: 4219690-4218680 (Counterclockwise)

Preceding gene: 222526621

Following gene: 222526618

Centisome position: 80.09

GC content: 60.83

Gene sequence:

>1011_bases
ATGAATATGACACGTTGGATTACAACCATCCGCGAACGACTGCAACGACCGGCACCGCCCCCTGAGACGCGCCGGATCGG
GCTGGCCCTGAGTGGCGGCGGCGGCAAGGGGGCAGCGCACATCGGTGTCTTGCAGGTGATTCAGGAACTCGATATTCCGA
TTGACCTGATTGTTGGCACCTCAGCAGGAGGTGCGGTTGCCGTGCTCTACGCTGCGGGCTTTGATCTCGCTGCGATCCAG
GACGTTTTTCGCCAGAGCGCATTGCGCCGTATTGCTACTCCCGACCCAACCGGCACCGGCATTATCGGCCAGCGGCGGCG
GGAGGAGATGCTGTATCGTCTCCTCGGTGACCGCACCTTTGCCGATCTTAACCTGCCATGTGCGGTCGTGGCAACCGATC
TGGTCAGTGGCGAGACGGTTGTCCTTAACGAGGGGCCAGTTGTGCCGGCATTGCTGGCAACCACCGCACTCCCGGCGCTC
TTCCCACCGGTGCCCTACGGTGACATGCTCCTGGCCGATGGCGGCATTCTCAACAATTTACCGGTTGATGTGGCGTATGA
GCTGGGTGCTCAGCGGGTAATCGCGGTTGATTTGCGCGATGCCCAGGCCGGGTTCTCGCTCCAACCTGAAGAGAACGATA
GCCTGCTGGCGCGTTTTATGTTTGCGCCGAAGCAGTTTGCAGTTGCCCAGCGTGCGTTGAGTTTGCTGATGGCGGAAGCA
ACCGAGCTGCGTTTGCAGCAGCATCCGCCCGATGTGCTGATTCAGCCTGATGTTGCGTCCATCCATACGCTCGATTTGAG
CACCCCCGAAAAGGGGTATGCCATCGGGCTGGAAGCTGCACGTGAGCTGGCCGGTGAGCTGATCGATCTGCGGCTGTGGC
GGAACGGTACGCAACTGGCGGTTCAACCACAGCCGCGCCGTGCGCGCAAGATCGAACGGAAGCGTTCGGTAATGATTGGC
TCAAACCGACTACCGGCGCGTTCACGTCCAGAAGCAGCGGGGACGGTGTAG

Upstream 100 bases:

>100_bases
GGATGTCTGACATATACCAGCCTCTGCAAGGGATAAGCCATCTCAGTATCAGTCGCAAGTCGCTTTCGCCGGGCTAGACA
CGTTGCGTATAATTGAAACT

Downstream 100 bases:

>100_bases
TAGAAGATAGAAGATAGAAGATAGGAAATAGGAAATAGATAAAGAGGGTGAGGGGGCGCTGGGATAGCTCCCTCATTTTG
TGCGCTAGAACTTATTTCAT

Product: Patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MNMTRWITTIRERLQRPAPPPETRRIGLALSGGGGKGAAHIGVLQVIQELDIPIDLIVGTSAGGAVAVLYAAGFDLAAIQ
DVFRQSALRRIATPDPTGTGIIGQRRREEMLYRLLGDRTFADLNLPCAVVATDLVSGETVVLNEGPVVPALLATTALPAL
FPPVPYGDMLLADGGILNNLPVDVAYELGAQRVIAVDLRDAQAGFSLQPEENDSLLARFMFAPKQFAVAQRALSLLMAEA
TELRLQQHPPDVLIQPDVASIHTLDLSTPEKGYAIGLEAARELAGELIDLRLWRNGTQLAVQPQPRRARKIERKRSVMIG
SNRLPARSRPEAAGTV

Sequences:

>Translated_336_residues
MNMTRWITTIRERLQRPAPPPETRRIGLALSGGGGKGAAHIGVLQVIQELDIPIDLIVGTSAGGAVAVLYAAGFDLAAIQ
DVFRQSALRRIATPDPTGTGIIGQRRREEMLYRLLGDRTFADLNLPCAVVATDLVSGETVVLNEGPVVPALLATTALPAL
FPPVPYGDMLLADGGILNNLPVDVAYELGAQRVIAVDLRDAQAGFSLQPEENDSLLARFMFAPKQFAVAQRALSLLMAEA
TELRLQQHPPDVLIQPDVASIHTLDLSTPEKGYAIGLEAARELAGELIDLRLWRNGTQLAVQPQPRRARKIERKRSVMIG
SNRLPARSRPEAAGTV
>Mature_336_residues
MNMTRWITTIRERLQRPAPPPETRRIGLALSGGGGKGAAHIGVLQVIQELDIPIDLIVGTSAGGAVAVLYAAGFDLAAIQ
DVFRQSALRRIATPDPTGTGIIGQRRREEMLYRLLGDRTFADLNLPCAVVATDLVSGETVVLNEGPVVPALLATTALPAL
FPPVPYGDMLLADGGILNNLPVDVAYELGAQRVIAVDLRDAQAGFSLQPEENDSLLARFMFAPKQFAVAQRALSLLMAEA
TELRLQQHPPDVLIQPDVASIHTLDLSTPEKGYAIGLEAARELAGELIDLRLWRNGTQLAVQPQPRRARKIERKRSVMIG
SNRLPARSRPEAAGTV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=181, Percent_Identity=33.1491712707182, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI116256487, Length=181, Percent_Identity=33.1491712707182, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI260656039, Length=181, Percent_Identity=33.1491712707182, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI260656043, Length=181, Percent_Identity=33.1491712707182, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI260656037, Length=181, Percent_Identity=33.1491712707182, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI148727335, Length=187, Percent_Identity=31.5508021390374, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI148727290, Length=187, Percent_Identity=31.5508021390374, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI226510936, Length=293, Percent_Identity=28.6689419795222, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71997289, Length=293, Percent_Identity=24.5733788395904, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71997299, Length=293, Percent_Identity=24.5733788395904, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=282, Percent_Identity=29.0780141843972, Blast_Score=96, Evalue=8e-21,
Organism=Drosophila melanogaster, GI28571388, Length=182, Percent_Identity=31.8681318681319, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281376913, Length=182, Percent_Identity=31.8681318681319, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36198; Mature: 36198

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMTRWITTIRERLQRPAPPPETRRIGLALSGGGGKGAAHIGVLQVIQELDIPIDLIVGT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
SAGGAVAVLYAAGFDLAAIQDVFRQSALRRIATPDPTGTGIIGQRRREEMLYRLLGDRTF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
ADLNLPCAVVATDLVSGETVVLNEGPVVPALLATTALPALFPPVPYGDMLLADGGILNNL
ECCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
PVDVAYELGAQRVIAVDLRDAQAGFSLQPEENDSLLARFMFAPKQFAVAQRALSLLMAEA
CHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TELRLQQHPPDVLIQPDVASIHTLDLSTPEKGYAIGLEAARELAGELIDLRLWRNGTQLA
HHHHHHCCCCCEEECCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHEEHEEECCCCEEE
VQPQPRRARKIERKRSVMIGSNRLPARSRPEAAGTV
ECCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNMTRWITTIRERLQRPAPPPETRRIGLALSGGGGKGAAHIGVLQVIQELDIPIDLIVGT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
SAGGAVAVLYAAGFDLAAIQDVFRQSALRRIATPDPTGTGIIGQRRREEMLYRLLGDRTF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
ADLNLPCAVVATDLVSGETVVLNEGPVVPALLATTALPALFPPVPYGDMLLADGGILNNL
ECCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
PVDVAYELGAQRVIAVDLRDAQAGFSLQPEENDSLLARFMFAPKQFAVAQRALSLLMAEA
CHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TELRLQQHPPDVLIQPDVASIHTLDLSTPEKGYAIGLEAARELAGELIDLRLWRNGTQLA
HHHHHHCCCCCEEECCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHEEHEEECCCCEEE
VQPQPRRARKIERKRSVMIGSNRLPARSRPEAAGTV
ECCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]