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The map label for this gene is sigX [H]

Identifier: 222526594

GI number: 222526594

Start: 4190825

End: 4191367

Strand: Reverse

Name: sigX [H]

Synonym: Chy400_3362

Alternate gene names: 222526594

Gene position: 4191367-4190825 (Counterclockwise)

Preceding gene: 222526595

Following gene: 222526593

Centisome position: 79.55

GC content: 49.54

Gene sequence:

>543_bases
GTGCTCGACGATGCAGAACTGCTCCGCCGGGCGTATGAACTGGATACTGATGCGTTGGCGGCAATTCACGATACATATTA
TCAGCCACTTTACCGATACATCTCTTTCCGGGTAGGTGACCGTTACACATGTGAAGATTTGGTCAGCGAAGTGTTTACTC
GTTTTCTCAGTACATTACGCCAGCGTAAATCGCTACCAAACAATTTACGTGGATGGCTCTTCGGGGTAGCGGCCAATGTT
GTGAGCGATCACTTTCGACGCAGCTATCGTTCCCCGCAGACCAGCCTTGATGAACAACTTATGAGTCGCGAACCACTCCC
ATCGGAAATAGCTGAGAAAGCTGCGACAAATGAAGAACTACGCCTGGCAATCAGCCAACTAACACCTGATCAACAACACG
TTTTAGCTCTACGTTTTGCTCAAAATCTACCAATTCAGGAAGTCGCCCGTATTCTTGGCAAAACTGAGGGTGCTGTTAAA
CAACTACAGGCACGTGCGATTGCGGCACTGGCACGCCAAATGACACCGGGGGTGGTCGAATGA

Upstream 100 bases:

>100_bases
ATGAGCAACGGAACGTACCACAACCATCACTGAGGGGGAGCGGACGGAATGAATGCAGCTCATTCCGTCCTAAAAAGCGA
TACCAATCAAAGGAGTTGCT

Downstream 100 bases:

>100_bases
CAGACAAATCGTTAGACACCATCTTAAACGATTGTATCGATGCCCTCGCCGCAGGTGCAACGATTGATGAAGTATTGGCG
CGCTACCCTGAGCAGGCTAC

Product: RNA polymerase sigma-32 subunit RpoH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLDDAELLRRAYELDTDALAAIHDTYYQPLYRYISFRVGDRYTCEDLVSEVFTRFLSTLRQRKSLPNNLRGWLFGVAANV
VSDHFRRSYRSPQTSLDEQLMSREPLPSEIAEKAATNEELRLAISQLTPDQQHVLALRFAQNLPIQEVARILGKTEGAVK
QLQARAIAALARQMTPGVVE

Sequences:

>Translated_180_residues
MLDDAELLRRAYELDTDALAAIHDTYYQPLYRYISFRVGDRYTCEDLVSEVFTRFLSTLRQRKSLPNNLRGWLFGVAANV
VSDHFRRSYRSPQTSLDEQLMSREPLPSEIAEKAATNEELRLAISQLTPDQQHVLALRFAQNLPIQEVARILGKTEGAVK
QLQARAIAALARQMTPGVVE
>Mature_180_residues
MLDDAELLRRAYELDTDALAAIHDTYYQPLYRYISFRVGDRYTCEDLVSEVFTRFLSTLRQRKSLPNNLRGWLFGVAANV
VSDHFRRSYRSPQTSLDEQLMSREPLPSEIAEKAATNEELRLAISQLTPDQQHVLALRFAQNLPIQEVARILGKTEGAVK
QLQARAIAALARQMTPGVVE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20508; Mature: 20508

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDAELLRRAYELDTDALAAIHDTYYQPLYRYISFRVGDRYTCEDLVSEVFTRFLSTLR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
QRKSLPNNLRGWLFGVAANVVSDHFRRSYRSPQTSLDEQLMSREPLPSEIAEKAATNEEL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHH
RLAISQLTPDQQHVLALRFAQNLPIQEVARILGKTEGAVKQLQARAIAALARQMTPGVVE
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDDAELLRRAYELDTDALAAIHDTYYQPLYRYISFRVGDRYTCEDLVSEVFTRFLSTLR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
QRKSLPNNLRGWLFGVAANVVSDHFRRSYRSPQTSLDEQLMSREPLPSEIAEKAATNEEL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHH
RLAISQLTPDQQHVLALRFAQNLPIQEVARILGKTEGAVKQLQARAIAALARQMTPGVVE
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]