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The map label for this gene is rbfA

Identifier: 222526493

GI number: 222526493

Start: 4067104

End: 4067487

Strand: Direct

Name: rbfA

Synonym: Chy400_3260

Alternate gene names: 222526493

Gene position: 4067104-4067487 (Clockwise)

Preceding gene: 222526492

Following gene: 222526494

Centisome position: 77.19

GC content: 51.56

Gene sequence:

>384_bases
ATGGCAAAACACCGCTTGCAACAGGTTGCCGATACCATGCAACGTGTGCTTGGTGATGTCATACAGAAAGAGCTAAAAGA
TCCGCGGGTCGGTTTTGCAACAGTAACCGGCGTTGAGGTCAGCGCCGATCTGCAACACGCAAAGGTGCGCATTTCGGTCA
TGGGTTCACCAGAAGAACGTGAAGCGGCAATGGCTGCGTTACAGCGCGCACGAGGCTTTTTGCGCAAACGAGTGGCCGAG
GAGATGAGTTATATGCGCTTTGTTCCTGAATTGCACCTGATTCAGGACACCTCTCTCGACTACACGATGCATATGGACGA
AGTATTCCGCGCTATTCAACACGAGCGGTTAGTCAATCCGCCCAAACTTGACGATGAACAGTAA

Upstream 100 bases:

>100_bases
CATTCGTGATACCCTGAGAAGAGTATCTGTCGAACCCAAGGCAATCCCTGGCGATCTGTATGCCCGGACTTACCAGGGTA
GCTAGAAAGAGAAGAAGCAT

Downstream 100 bases:

>100_bases
TCTCGTTCCGTTCGATCCCTATTACAAGAAGCGGATCACGTATGTATGGCGTGGTCAGCAGTTTGCATTCGATGTGGCGC
ATACGATCTTCTCTTCGTTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAKHRLQQVADTMQRVLGDVIQKELKDPRVGFATVTGVEVSADLQHAKVRISVMGSPEEREAAMAALQRARGFLRKRVAE
EMSYMRFVPELHLIQDTSLDYTMHMDEVFRAIQHERLVNPPKLDDEQ

Sequences:

>Translated_127_residues
MAKHRLQQVADTMQRVLGDVIQKELKDPRVGFATVTGVEVSADLQHAKVRISVMGSPEEREAAMAALQRARGFLRKRVAE
EMSYMRFVPELHLIQDTSLDYTMHMDEVFRAIQHERLVNPPKLDDEQ
>Mature_126_residues
AKHRLQQVADTMQRVLGDVIQKELKDPRVGFATVTGVEVSADLQHAKVRISVMGSPEEREAAMAALQRARGFLRKRVAEE
MSYMRFVPELHLIQDTSLDYTMHMDEVFRAIQHERLVNPPKLDDEQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=128, Percent_Identity=40.625, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLAA (A9WGP7)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001636602.1
- ProteinModelPortal:   A9WGP7
- SMR:   A9WGP7
- GeneID:   5827488
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3014
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- ProtClustDB:   CLSK974944
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14586; Mature: 14455

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHRLQQVADTMQRVLGDVIQKELKDPRVGFATVTGVEVSADLQHAKVRISVMGSPEER
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHCCHHHHEEEEEECCCCHHH
EAAMAALQRARGFLRKRVAEEMSYMRFVPELHLIQDTSLDYTMHMDEVFRAIQHERLVNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECHHHHHHHHHHHHCCCC
PKLDDEQ
CCCCCCC
>Mature Secondary Structure 
AKHRLQQVADTMQRVLGDVIQKELKDPRVGFATVTGVEVSADLQHAKVRISVMGSPEER
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHCCHHHHEEEEEECCCCHHH
EAAMAALQRARGFLRKRVAEEMSYMRFVPELHLIQDTSLDYTMHMDEVFRAIQHERLVNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECHHHHHHHHHHHHCCCC
PKLDDEQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA