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The map label for this gene is 222526475

Identifier: 222526475

GI number: 222526475

Start: 4040747

End: 4041445

Strand: Direct

Name: 222526475

Synonym: Chy400_3242

Alternate gene names: NA

Gene position: 4040747-4041445 (Clockwise)

Preceding gene: 222526474

Following gene: 222526476

Centisome position: 76.69

GC content: 55.22

Gene sequence:

>699_bases
ATGCTTCCCCTTACAGACACCGTCCCTTCCCGTACATTTCCGGCAGTGAACTGGGCATTGCTGGCAGCGAATGTTATCGT
CTTCCTGTTGATGGTCGGAAATGAACGGCTTACCGAAGCCTGGGTCGCGACCCTGGCCCTCGTACCGGCGCGCTTTCTTG
CCAATCCACTCGATCCCACCCAACTACTCACCATTTTCACCTCAATGTTTATGCACGGCGGCTGGTTTCACCTCTTCAGC
AATATGCTGGCCCTCTACATCTTCGGCGACAATGTGGAAGATCGGATGGGGAGTCAGCGTTATCTAATCTTCTACCTGCT
GTGTGGCGTAGCCGCCGCATTTGCTCACATCCTCTTCAATCCGACTTCGCCGATCCCTACCGTTGGCGCCAGTGGTGCGT
TGAGTGGTGTGCTGGCAGCGTATCTGTTGTTCTTCCCGACGGCACGGGTAGTGACGCTGATACCGATCTTCTTCTTGCCG
TGGCTGGTCGAAGTACCGGCTATCGTGTACCTTGGTCTGTGGTTTATTTCGCAACTGGCAAATGGTCTCTTCTCCATCAT
CATCGACGTTCAGGAGATGGGTGGCGTAGCGTGGTGGGCGCACATTGGTGGATTTGTGGCCGGGCTGGTGCTGGCACCAT
TGTTTCGGCAGCGGCGTTATGTACGGCGCTACTATCTGGACGAGTATTATCCCTGGTGA

Upstream 100 bases:

>100_bases
ATTCCTCACGTCCAATTCATTGTACGTTCAATATCTCCATGCCAGACCTGTCGTATCATTGAATGACAATCCAGTACTGG
ATGGAATAGAAAGGAACCGT

Downstream 100 bases:

>100_bases
GTGTAATGTGAGGAGCGTGGTATGGATTTCTTGTCACTGCTGTGGTTGTTCTTCATCATTTCATCGTTGCAGCCGGTGAT
CAGGCAGCGTATGCTCGACG

Product: Rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Integral Membrane Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLPLTDTVPSRTFPAVNWALLAANVIVFLLMVGNERLTEAWVATLALVPARFLANPLDPTQLLTIFTSMFMHGGWFHLFS
NMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPTSPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLP
WLVEVPAIVYLGLWFISQLANGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRRYYLDEYYPW

Sequences:

>Translated_232_residues
MLPLTDTVPSRTFPAVNWALLAANVIVFLLMVGNERLTEAWVATLALVPARFLANPLDPTQLLTIFTSMFMHGGWFHLFS
NMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPTSPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLP
WLVEVPAIVYLGLWFISQLANGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRRYYLDEYYPW
>Mature_232_residues
MLPLTDTVPSRTFPAVNWALLAANVIVFLLMVGNERLTEAWVATLALVPARFLANPLDPTQLLTIFTSMFMHGGWFHLFS
NMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPTSPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLP
WLVEVPAIVYLGLWFISQLANGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRRYYLDEYYPW

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26013; Mature: 26013

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLTDTVPSRTFPAVNWALLAANVIVFLLMVGNERLTEAWVATLALVPARFLANPLDPT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
QLLTIFTSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFN
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
PTSPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLPWLVEVPAIVYLGLWFISQLA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRRYYLDEYYPW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLPLTDTVPSRTFPAVNWALLAANVIVFLLMVGNERLTEAWVATLALVPARFLANPLDPT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
QLLTIFTSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFN
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
PTSPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLPWLVEVPAIVYLGLWFISQLA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRRYYLDEYYPW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA