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The map label for this gene is xerC [H]

Identifier: 222525926

GI number: 222525926

Start: 3313867

End: 3314727

Strand: Direct

Name: xerC [H]

Synonym: Chy400_2681

Alternate gene names: 222525926

Gene position: 3313867-3314727 (Clockwise)

Preceding gene: 222525925

Following gene: 222525927

Centisome position: 62.89

GC content: 53.08

Gene sequence:

>861_bases
ATGAACCAGTATGTAGCGCAATTCCTTGCTTATATAGCCGACGAACGCAAGATGTCGGCCAACACGACCATCGCCTATCG
TACCGATCTTGATCAGCTTTGTGCGTTTCTCCACGAGCGCGGGATTGAACACTGGTCAGACGTCGACAGTGAGACGATGA
TGGCGTTCGTGATCAATCTCAAAGAGAAGCGGTACGCCAACTCAACGATGGCGCGTCGTTTGGCGGCGATCAAGTCGTTC
TTCTCATTTCTGAAAGAGCGTAACGTTATTCATCATGATCCTACCGATCAACTCGATGCACCGCGGGTTGATCGGTTCCC
GCCACGTGCTATTTCTCAGCATCAGGTTGATGAATTGCTGGAGGTGCCGCTACAAAACGGTACACCCGAAGGGATCCGCG
ACAAGGCAATGCTTGAAGTCTTGTACGCTACCGGTATGCGGGTAAGCGAGTTGGTTGCATTAAATGTTGATGATGTCGCT
TTTGATCACAGAACGGTGCGTTGTCGGGGGCGCCAGGGGCGGGAACGGACAATCCCGCTGAGTGATCCGGCATTGACTGC
GCTGGAGGAGTATCTTGACATTGCCCGTCCACAACTGGCGCGCCAGGCTCCTGATGATCCGGAAGCACTGTTTTTAAATC
ATCGTGGTAAACGGTTGACCCGTCAGGGCTTCTGGTTGATTCTTAAGACGTATGCCGAACAGGTTGGTATGCACGATTTG
ACGCCGCATATGTTGCGTCATTCGTTCGCGGCCCATCAATTGCGGAACGGTGTTGATCTGCGCGAATTGCAAGAGCGCCT
GGGCCACGCTTCGATTGCTACGACGCAGATGTATGCACACCTTGCCGAGGAGTCGTCTTGA

Upstream 100 bases:

>100_bases
AAGAGAGCTGCTGCTTTTGAATTGACACACCGTCAGCTTTCCATTACCATACACGGTACTCTAAGACCTTCCATTAGCCT
TCAATGAGCAGGCAAGACTC

Downstream 100 bases:

>100_bases
TATAATGGTTGCGAGTTGCTACTGCGTGTGCTATACTCGCAGCACATCGGCGATGATCCGGAGGAGTACGTCGCGACGGG
CGCACAGCGAACTAGGGACG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNQYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKEKRYANSTMARRLAAIKSF
FSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEVPLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVA
FDHRTVRCRGRQGRERTIPLSDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDL
TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS

Sequences:

>Translated_286_residues
MNQYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKEKRYANSTMARRLAAIKSF
FSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEVPLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVA
FDHRTVRCRGRQGRERTIPLSDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDL
TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS
>Mature_286_residues
MNQYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKEKRYANSTMARRLAAIKSF
FSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEVPLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVA
FDHRTVRCRGRQGRERTIPLSDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDL
TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=282, Percent_Identity=39.7163120567376, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1790244, Length=278, Percent_Identity=33.0935251798561, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=28.4883720930233, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790768, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32833; Mature: 32833

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINL
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
KEKRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH
EVPLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPL
HCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEECCHHHHHCCCEEEECCCCCCCCCCCC
SDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINL
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
KEKRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH
EVPLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPL
HCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEECCHHHHHCCCEEEECCCCCCCCCCCC
SDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA