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The map label for this gene is nlpD [H]

Identifier: 222524816

GI number: 222524816

Start: 1963327

End: 1964730

Strand: Direct

Name: nlpD [H]

Synonym: Chy400_1543

Alternate gene names: 222524816

Gene position: 1963327-1964730 (Clockwise)

Preceding gene: 222524813

Following gene: 222524817

Centisome position: 37.26

GC content: 55.91

Gene sequence:

>1404_bases
ATGCACGTAGTATTTCATCATCCTCCATGGTTAGAGCGATGGTTGCGCAGCAAGCGGCGGCTGGCTGCGGCGCGGCGGAC
TGTTCGCCATGTACGCGATGGCTACTGGGTTGCTACGCAACCCTCTGTCGAAGGTTCGATCCGGTCACGAGCGTTACGCT
GGCAGCTCCGCCTTTCCCGGCAGTTAGCTCATATCTTGCTGATAGTTGGGGTACTTGGCGTTTTGATCGTTGATCGAACA
CTTCCTCTTCAATCGCTGACAAATCCCCGTGAGGTGTCTGACGCGATAGTGACGCAATTGTCTTCAGTAGTGCCGGCAGA
GCAGATAGTACGAATTGCGCCGGCGGTACGTCATACCCCCTCAAAGACAGTCGAGCCAGAACCAATTGCGCCGGCGCTAC
GGGCGCCTCAGCCGGTATTGACCGCTTTTCAAACAACCCACATGCTGGCTGAGAACGAAACGCTGGCAGAGGTAGCCGAG
CGCTATCAGATTCCTCTCAGCACGTTAGTGTGGACAAACCAACTGGATCGTGGCGATGCGTTGCGGGTTGGACAACCGTT
GCGCATACCACACCTGGCTGGGTTAACACATACGGTCGTTGAAGGAGAGACCCTTGCGGGACTGGCCGAGCGCTACGGTG
TGGCACCGGAAGCTATAGCCACTTTTGCACCGAATCGGTTGCCTGGCGGTCAATTGGTAATAGGCCGCGAAATATTTATT
CCAGGTGGTCGATTGCCGTGGTCAAATGAACAGGAGGCTGCGTTTGCCCAGCGTCGTGCCGAGCCGGTTGGTATTGTACT
GGTGGATGAAACAAATGTTCGATCCGGCCCAAGCACTGATCATCCACGGCAGGCGCAGTTGGCAGCCGGTCGGCAGGTGG
CTTTGCGGGGGCGGTACAATGATTGGGTAAAGATTGAAATCGGCGATATTACCGGCTGGATTCGGAGTGATTTGTTAGAG
GTTGATCCGGCGCAAGTCGCAGCCCTTCCGGAAGTCCGCGATTTTCCGCCGCCTCCACCGCGCTGGGTCTGGCCTGCACG
AGGGGTGTTGACCTCTGGTTTCGGGCCACGTTGGGGTGGATTTCATAACGGGATAGATATTGCCAATCGTGCCTGGACAC
CAATCGTTGCAGCGAGTAGTGGACGGGTACGTGAGGCAGGATGGTGTAGTGGTTATGGGTATTGCGTCAAGATTCGGCAT
CCTGGCGGTATCGAAACGATCTACGGTCATCTCATTGCCCAGCCAGTTGTGCGGGTCGGACAGGAAGTGAGTGCCGGACA
ACTAATTGGCTATATGGGAAGTACCTATGATCGCGCTGGAGGCGGCTATTCAACCGGCGTTCATCTACACTTCACCATTC
TCGTCAATGGGCGTGCCGTCAATCCATTGCGTTATCTTCCTTGA

Upstream 100 bases:

>100_bases
AATTCTACGCTTATATCTTATCATGCGATGAAAGATGCCGTCAAGATTGACAAAGCAGTCTACTACGTGTATGCTCTACA
GAGAAGGTGAGAGTAGAAGC

Downstream 100 bases:

>100_bases
TGTTGTTTTGTGCCTGCCTGTGGTACAATAGCGCTCAGAGTGGCTGCTTGAGGCAGGTGTTTCACGTGAAACAACATCTA
ACCCATTCACAACCACATAT

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MHVVFHHPPWLERWLRSKRRLAAARRTVRHVRDGYWVATQPSVEGSIRSRALRWQLRLSRQLAHILLIVGVLGVLIVDRT
LPLQSLTNPREVSDAIVTQLSSVVPAEQIVRIAPAVRHTPSKTVEPEPIAPALRAPQPVLTAFQTTHMLAENETLAEVAE
RYQIPLSTLVWTNQLDRGDALRVGQPLRIPHLAGLTHTVVEGETLAGLAERYGVAPEAIATFAPNRLPGGQLVIGREIFI
PGGRLPWSNEQEAAFAQRRAEPVGIVLVDETNVRSGPSTDHPRQAQLAAGRQVALRGRYNDWVKIEIGDITGWIRSDLLE
VDPAQVAALPEVRDFPPPPPRWVWPARGVLTSGFGPRWGGFHNGIDIANRAWTPIVAASSGRVREAGWCSGYGYCVKIRH
PGGIETIYGHLIAQPVVRVGQEVSAGQLIGYMGSTYDRAGGGYSTGVHLHFTILVNGRAVNPLRYLP

Sequences:

>Translated_467_residues
MHVVFHHPPWLERWLRSKRRLAAARRTVRHVRDGYWVATQPSVEGSIRSRALRWQLRLSRQLAHILLIVGVLGVLIVDRT
LPLQSLTNPREVSDAIVTQLSSVVPAEQIVRIAPAVRHTPSKTVEPEPIAPALRAPQPVLTAFQTTHMLAENETLAEVAE
RYQIPLSTLVWTNQLDRGDALRVGQPLRIPHLAGLTHTVVEGETLAGLAERYGVAPEAIATFAPNRLPGGQLVIGREIFI
PGGRLPWSNEQEAAFAQRRAEPVGIVLVDETNVRSGPSTDHPRQAQLAAGRQVALRGRYNDWVKIEIGDITGWIRSDLLE
VDPAQVAALPEVRDFPPPPPRWVWPARGVLTSGFGPRWGGFHNGIDIANRAWTPIVAASSGRVREAGWCSGYGYCVKIRH
PGGIETIYGHLIAQPVVRVGQEVSAGQLIGYMGSTYDRAGGGYSTGVHLHFTILVNGRAVNPLRYLP
>Mature_467_residues
MHVVFHHPPWLERWLRSKRRLAAARRTVRHVRDGYWVATQPSVEGSIRSRALRWQLRLSRQLAHILLIVGVLGVLIVDRT
LPLQSLTNPREVSDAIVTQLSSVVPAEQIVRIAPAVRHTPSKTVEPEPIAPALRAPQPVLTAFQTTHMLAENETLAEVAE
RYQIPLSTLVWTNQLDRGDALRVGQPLRIPHLAGLTHTVVEGETLAGLAERYGVAPEAIATFAPNRLPGGQLVIGREIFI
PGGRLPWSNEQEAAFAQRRAEPVGIVLVDETNVRSGPSTDHPRQAQLAAGRQVALRGRYNDWVKIEIGDITGWIRSDLLE
VDPAQVAALPEVRDFPPPPPRWVWPARGVLTSGFGPRWGGFHNGIDIANRAWTPIVAASSGRVREAGWCSGYGYCVKIRH
PGGIETIYGHLIAQPVVRVGQEVSAGQLIGYMGSTYDRAGGGYSTGVHLHFTILVNGRAVNPLRYLP

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=127, Percent_Identity=44.0944881889764, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082174, Length=143, Percent_Identity=39.8601398601399, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081989, Length=102, Percent_Identity=39.2156862745098, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 51364; Mature: 51364

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVVFHHPPWLERWLRSKRRLAAARRTVRHVRDGYWVATQPSVEGSIRSRALRWQLRLSR
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHH
QLAHILLIVGVLGVLIVDRTLPLQSLTNPREVSDAIVTQLSSVVPAEQIVRIAPAVRHTP
HHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
SKTVEPEPIAPALRAPQPVLTAFQTTHMLAENETLAEVAERYQIPLSTLVWTNQLDRGDA
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCCC
LRVGQPLRIPHLAGLTHTVVEGETLAGLAERYGVAPEAIATFAPNRLPGGQLVIGREIFI
EECCCCCCCCHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEEE
PGGRLPWSNEQEAAFAQRRAEPVGIVLVDETNVRSGPSTDHPRQAQLAAGRQVALRGRYN
CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEEECCCC
DWVKIEIGDITGWIRSDLLEVDPAQVAALPEVRDFPPPPPRWVWPARGVLTSGFGPRWGG
CEEEEEECCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
FHNGIDIANRAWTPIVAASSGRVREAGWCSGYGYCVKIRHPGGIETIYGHLIAQPVVRVG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
QEVSAGQLIGYMGSTYDRAGGGYSTGVHLHFTILVNGRAVNPLRYLP
CCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MHVVFHHPPWLERWLRSKRRLAAARRTVRHVRDGYWVATQPSVEGSIRSRALRWQLRLSR
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHH
QLAHILLIVGVLGVLIVDRTLPLQSLTNPREVSDAIVTQLSSVVPAEQIVRIAPAVRHTP
HHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
SKTVEPEPIAPALRAPQPVLTAFQTTHMLAENETLAEVAERYQIPLSTLVWTNQLDRGDA
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCCC
LRVGQPLRIPHLAGLTHTVVEGETLAGLAERYGVAPEAIATFAPNRLPGGQLVIGREIFI
EECCCCCCCCHHCCCHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEEE
PGGRLPWSNEQEAAFAQRRAEPVGIVLVDETNVRSGPSTDHPRQAQLAAGRQVALRGRYN
CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEEECCCC
DWVKIEIGDITGWIRSDLLEVDPAQVAALPEVRDFPPPPPRWVWPARGVLTSGFGPRWGG
CEEEEEECCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
FHNGIDIANRAWTPIVAASSGRVREAGWCSGYGYCVKIRHPGGIETIYGHLIAQPVVRVG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
QEVSAGQLIGYMGSTYDRAGGGYSTGVHLHFTILVNGRAVNPLRYLP
CCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]