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The map label for this gene is yagI [H]

Identifier: 222524744

GI number: 222524744

Start: 1867377

End: 1868183

Strand: Direct

Name: yagI [H]

Synonym: Chy400_1471

Alternate gene names: 222524744

Gene position: 1867377-1868183 (Clockwise)

Preceding gene: 222524743

Following gene: 222524745

Centisome position: 35.44

GC content: 55.89

Gene sequence:

>807_bases
ATGCTGCAAACTCTGCAAAAAGCGGCGCGAGCGCTCACGCTATTTACGCCGATGCACCCGGAATGGAGTGTTGGCGATAT
GGCAAAAGCGCTCGAATTACCCAAATCAAGCGTCTCGGAATTGTTGAGTAGTCTGGCCGAACAAAATCTGCTCCGCCGGG
TGGGGCCGGGACGTTATCGATTAGGATGGCGCCTGCTCGAATTGGGCCAAACCCTGCTCAAAACGACAGAGTTTCGCGAA
GAGGCGCGGGCCGTGATGCAAGAGATGGTTGCAGCATGGGGTGAGACGATGCATCTGGCCGTGCTCGAAGCAGGGACGGT
TGTCTATTTAGAGAAATTACGCGGCCAGCAGGGATTGCAGGTCGAGCTGTCGGGGATTGGTGTGCGCTTGCCGGCTCACT
GCTCTGGCGTGGGTAAGGTCTTGCTGGCACACCAACCCTGGCCAGAGGTTCTGCGGGTGGTTGGTGATGATCAACTCTAC
CCGTTCACCGCCAACACCATCACCTCCCTTGACGCGCTGGCCGAAGAGTTAGCCCATGTGCGCCAACGTGGGTATGCATA
CGATCTGGAAGAGGTCTCGATTGGCCTCTGTTGTGTGGCAGCTCCAATCCGTGATTATGAGGGGAATGTGATTGCTGCCA
TCAGCTTCTCGACTCCCACCCACCGCTTTCGCAAGCATCGCGAACAATACACGCGCGCAATCGTTGAAGGTGCGCAACGT
ATCTCTGAGCGGTTGGGATACTATGGAGGAACATCTGCATGCAAATCGACAAAGTTAAAGTCGCCATCCTCGGTTCCGGC
AATATAG

Upstream 100 bases:

>100_bases
GGCATAATCACTACTCGCGGAAAGCGCAAGCACCCTGCATGATTGCGCTTTCCGTCAATGCCTTACCTCACAACGGTGAT
CAGGCAGGAAGGAGCACCCT

Downstream 100 bases:

>100_bases
GCACCGATTTGATGTACAAACTGCTGAAGCAGCCGGGCAGAATGGAGCTGGCGCTCGTTGCAGGTATCGATCCGGCCTCT
GAAGGGTTGGCGCGCGCCAG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLQTLQKAARALTLFTPMHPEWSVGDMAKALELPKSSVSELLSSLAEQNLLRRVGPGRYRLGWRLLELGQTLLKTTEFRE
EARAVMQEMVAAWGETMHLAVLEAGTVVYLEKLRGQQGLQVELSGIGVRLPAHCSGVGKVLLAHQPWPEVLRVVGDDQLY
PFTANTITSLDALAEELAHVRQRGYAYDLEEVSIGLCCVAAPIRDYEGNVIAAISFSTPTHRFRKHREQYTRAIVEGAQR
ISERLGYYGGTSACKSTKLKSPSSVPAI

Sequences:

>Translated_268_residues
MLQTLQKAARALTLFTPMHPEWSVGDMAKALELPKSSVSELLSSLAEQNLLRRVGPGRYRLGWRLLELGQTLLKTTEFRE
EARAVMQEMVAAWGETMHLAVLEAGTVVYLEKLRGQQGLQVELSGIGVRLPAHCSGVGKVLLAHQPWPEVLRVVGDDQLY
PFTANTITSLDALAEELAHVRQRGYAYDLEEVSIGLCCVAAPIRDYEGNVIAAISFSTPTHRFRKHREQYTRAIVEGAQR
ISERLGYYGGTSACKSTKLKSPSSVPAI
>Mature_268_residues
MLQTLQKAARALTLFTPMHPEWSVGDMAKALELPKSSVSELLSSLAEQNLLRRVGPGRYRLGWRLLELGQTLLKTTEFRE
EARAVMQEMVAAWGETMHLAVLEAGTVVYLEKLRGQQGLQVELSGIGVRLPAHCSGVGKVLLAHQPWPEVLRVVGDDQLY
PFTANTITSLDALAEELAHVRQRGYAYDLEEVSIGLCCVAAPIRDYEGNVIAAISFSTPTHRFRKHREQYTRAIVEGAQR
ISERLGYYGGTSACKSTKLKSPSSVPAI

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=254, Percent_Identity=34.6456692913386, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1788131, Length=230, Percent_Identity=33.0434782608696, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789999, Length=219, Percent_Identity=31.9634703196347, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082359, Length=252, Percent_Identity=27.3809523809524, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1790752, Length=250, Percent_Identity=30, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786715, Length=246, Percent_Identity=28.4552845528455, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788581, Length=244, Percent_Identity=30.327868852459, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29601; Mature: 29601

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTLQKAARALTLFTPMHPEWSVGDMAKALELPKSSVSELLSSLAEQNLLRRVGPGRYR
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LGWRLLELGQTLLKTTEFREEARAVMQEMVAAWGETMHLAVLEAGTVVYLEKLRGQQGLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHCCHHHHHHHHCCCCCCE
VELSGIGVRLPAHCSGVGKVLLAHQPWPEVLRVVGDDQLYPFTANTITSLDALAEELAHV
EEEECCEEECCCHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
RQRGYAYDLEEVSIGLCCVAAPIRDYEGNVIAAISFSTPTHRFRKHREQYTRAIVEGAQR
HHCCCCCCHHHHHHHHHHHCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ISERLGYYGGTSACKSTKLKSPSSVPAI
HHHHHCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLQTLQKAARALTLFTPMHPEWSVGDMAKALELPKSSVSELLSSLAEQNLLRRVGPGRYR
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LGWRLLELGQTLLKTTEFREEARAVMQEMVAAWGETMHLAVLEAGTVVYLEKLRGQQGLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHCCHHHHHHHHCCCCCCE
VELSGIGVRLPAHCSGVGKVLLAHQPWPEVLRVVGDDQLYPFTANTITSLDALAEELAHV
EEEECCEEECCCHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
RQRGYAYDLEEVSIGLCCVAAPIRDYEGNVIAAISFSTPTHRFRKHREQYTRAIVEGAQR
HHCCCCCCHHHHHHHHHHHCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ISERLGYYGGTSACKSTKLKSPSSVPAI
HHHHHCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]