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The map label for this gene is ymdB [C]

Identifier: 222524687

GI number: 222524687

Start: 1796889

End: 1797461

Strand: Direct

Name: ymdB [C]

Synonym: Chy400_1414

Alternate gene names: 222524687

Gene position: 1796889-1797461 (Clockwise)

Preceding gene: 222524681

Following gene: 222524688

Centisome position: 34.1

GC content: 55.67

Gene sequence:

>573_bases
ATGATGAATGAACCGCTAACATTACGTATTGGGCAGGCGTGTCTTGAGGTGGTCGAGGGCGATATCGTGAGCCAACAGGT
TGATGCGATTGTCAATGCCGCTAATGAACAGTTGCTGCAGGGTGGTGGTGTCTGCGGTGCAATCTTTCGCGCTGCCGGAG
CTGCTGAACTACAACGGGCATGTGATGCTGTTGCTCCCTGTCCAACCGGCGAAGCTCGTATTACGCCCGGCTTTGCTCTG
CCGGCACGCTATATCATTCACGCGGTTGGGCCTATCTTCGACCACTATGCACCATCAGAAGCCGACCGGCTGCTCATAAG
CGCGTATCGCGCAAGCCTGGCGCTGGCCCGTCAGTATGGTCTACAAAGTATCGCTTTTCCCAGTATTGCCACCGGTATCT
ACGGTTTTCCGGTTACTCGTGCCGCACCGCTAGTCCTGCAAACGCTCATCGATGATCTGCATACCCATCAGGCCCCTGGT
CTGGTGCGGATGGTGCTGTGGCGCGATACGTTCCCGGTGTATCGTGATGTGTTCACCCACATGCAATCTGAACGGAAACT
GAACGGTGGGTAA

Upstream 100 bases:

>100_bases
TTACGATGGACGGGGTAGGGGATGGTGTTGCCGTATTCACAGTTCTGCCGGTACCTGATGGGGGTCTGCGGTAGACCTGG
CTGTTTAGAGAGGAGGATGG

Downstream 100 bases:

>100_bases
CCGGTGAGGCGCTGGTAATGCGCCAGCCGTGCCTGCAATAGGGTTGTGCCTGTACGAGCGTGTTGATACCAGGCATGAGC
CTGTTCACCCATGGCGATGA

Product: Appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MMNEPLTLRIGQACLEVVEGDIVSQQVDAIVNAANEQLLQGGGVCGAIFRAAGAAELQRACDAVAPCPTGEARITPGFAL
PARYIIHAVGPIFDHYAPSEADRLLISAYRASLALARQYGLQSIAFPSIATGIYGFPVTRAAPLVLQTLIDDLHTHQAPG
LVRMVLWRDTFPVYRDVFTHMQSERKLNGG

Sequences:

>Translated_190_residues
MMNEPLTLRIGQACLEVVEGDIVSQQVDAIVNAANEQLLQGGGVCGAIFRAAGAAELQRACDAVAPCPTGEARITPGFAL
PARYIIHAVGPIFDHYAPSEADRLLISAYRASLALARQYGLQSIAFPSIATGIYGFPVTRAAPLVLQTLIDDLHTHQAPG
LVRMVLWRDTFPVYRDVFTHMQSERKLNGG
>Mature_190_residues
MMNEPLTLRIGQACLEVVEGDIVSQQVDAIVNAANEQLLQGGGVCGAIFRAAGAAELQRACDAVAPCPTGEARITPGFAL
PARYIIHAVGPIFDHYAPSEADRLLISAYRASLALARQYGLQSIAFPSIATGIYGFPVTRAAPLVLQTLIDDLHTHQAPG
LVRMVLWRDTFPVYRDVFTHMQSERKLNGG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=158, Percent_Identity=43.6708860759494, Blast_Score=124, Evalue=4e-29,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=43.1952662721894, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI154813199, Length=147, Percent_Identity=37.4149659863946, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI207450721, Length=138, Percent_Identity=36.231884057971, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923143, Length=138, Percent_Identity=36.231884057971, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI20336746, Length=147, Percent_Identity=34.6938775510204, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371718, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371716, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371714, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371712, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371710, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371706, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1787283, Length=175, Percent_Identity=41.7142857142857, Blast_Score=112, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17538214, Length=156, Percent_Identity=41.6666666666667, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24586353, Length=133, Percent_Identity=33.0827067669173, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20456; Mature: 20456

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNEPLTLRIGQACLEVVEGDIVSQQVDAIVNAANEQLLQGGGVCGAIFRAAGAAELQRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
CDAVAPCPTGEARITPGFALPARYIIHAVGPIFDHYAPSEADRLLISAYRASLALARQYG
HHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
LQSIAFPSIATGIYGFPVTRAAPLVLQTLIDDLHTHQAPGLVRMVLWRDTFPVYRDVFTH
HHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
MQSERKLNGG
HHHHHCCCCC
>Mature Secondary Structure
MMNEPLTLRIGQACLEVVEGDIVSQQVDAIVNAANEQLLQGGGVCGAIFRAAGAAELQRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
CDAVAPCPTGEARITPGFALPARYIIHAVGPIFDHYAPSEADRLLISAYRASLALARQYG
HHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
LQSIAFPSIATGIYGFPVTRAAPLVLQTLIDDLHTHQAPGLVRMVLWRDTFPVYRDVFTH
HHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
MQSERKLNGG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]