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The map label for this gene is ccmF [H]

Identifier: 222524300

GI number: 222524300

Start: 1302173

End: 1304566

Strand: Reverse

Name: ccmF [H]

Synonym: Chy400_1023

Alternate gene names: 222524300

Gene position: 1304566-1302173 (Counterclockwise)

Preceding gene: 222524301

Following gene: 222524299

Centisome position: 24.76

GC content: 56.22

Gene sequence:

>2394_bases
ATGTATCTCTTTGGTACGTTCCTCCTGATGGCCAGTCTGGGGATGACCTTGCTGGCGATTATCAGTTATGGACTAGTTTT
ACGTGGGCAGCGGGTAGCGCTTAGTTATGCCCGTTTCGGTGTCTATGCGGCGTTAGCCGGCGTGCTGATGTCGTGGACGC
TACTGATTACGGTGTTTCTTGCCCGCCGCTTTGATCTGGACTACGTCTACAACTATAGCTCCCGCGATCTGGAGTTCTTC
TTCACGATTGCGGCCAGTTGGGCCGGTCAACCAGGTAGTTTTATGATCTGGTTGCTGTGGGGGTCAATTGCCAGCGCGTT
GCTGATTCGCCGTACCAAGCATTTTGAGCCGTATGTGTTAATGGTTGTTATGGCGATCCAGGCAGCGATCATTGGGTTTG
TGCTGGTGCTCAATCCATTCCAGCCCCTGGTCGATCCCAATACCGGCGTCGCACTTACCCCAGGTGACGGTCGCGGTCTC
AATCCGCTGTTGCACAACTTCTGGATGATCATTCACCCCCCAATCCTGTTCGTTGGCTATGCGCTTTCCATGATTCCCTT
CGCATTTGCCCTGGCTGCGCTGTGGCGGCGCGATTACGATACATGGGTGAAACGGGCCTTGCCATGGACATTGGCGGCCT
GGGCATTTCTGGGGCTGGCACTCTTGCTCGGCGGTTACTGGGCTTATGAGACGCTGGGCTGGGGTGGCTATTGGGGTTGG
GATCCGGTTGAAAACTTGTCGCTGGTACCCTGGCTCATTCTAACCGCCCTGATCCACGGGATGCTTGTGCAACGCACCCA
CGGTGGTTTGCGAAAGACCAACCTCGTGTTGGGTGTGGCGACGTACATTACGGTGTTCTACGCTACCTTTATGACCCGCA
GCGGGGTCTATGCTAACTTCTCTGTCCACTCATTTGTCGCCGAAGGGATTTTTGAGGGACTGGTTGGCTTTCAGATTTTC
TTGCTGGCGGTTGCCATTGTCTCGTTGCTGGCCCGCTGGAACGATATTCCTGCCCGTCCACTTAGTGACAAATTCTTCTC
GCGTGATAGCTTCTTCGTGCTGGCGATTATTACCATTGTCATGACCGCGCTGGTCGTTGGTATCGGCACCTCGATGCCGG
TCATTTCGGCTATTCCTGGGGTAGGGCATACGCTGCAAGAGTGGATGGGGCGTTATTTCGAGCTTGATGACGGCACCCTG
ATGAACCCGCAGGCGCAACCGTTTGAAGATGGCCGTTTTTCGCTTGCCCCATCCTTCTACCAGCGCACAGTACCTCCACT
CGGCGTGGTAGCAATCGTGTTGCTGATCGTTGGGCCACTCCTTGGCTGGCGCGACGCTAATCTCAGCCACCTCCTGCGTG
CATTGCGTTGGCCGGCAGTGTTTGCAGTGATAGCGGCTGTCGTGGCCATGATTATCAATGTGCGCGATTTGCTCTCCCTG
GCTTATGTTGCCGGTGGTGTCTTCGCGTTTGGAACGAACCTGGTGATGATTATTCGTACCCTGCGTGGTGGCTGGTTACG
GATCGGTGGCTATCTTGCTCACCTCGGTTTTACAGTGATGGCGATTGGGATGGTTGCCTCTTCGGCCTACGCTACTCCCG
ATACTCGCCTGACGCTATCTCCCGGTGAGTCGGCCCGATTGTTTGGCTATGAGTTTATCTTCAACGGCTATCAACTTGAT
GACCAGCAGCGTGGTGTGCTCGATCTCACGGTGAGTGACGGATCGGGTACCTTCTCGGCTCGACCGTATCTCTACTTTAA
TCAGCGTATGGGCGCAACCATGCAAACGCCCTCGATCCACAGCTATCTCTGGCACGATCTCTACATTTCACCGGCAGGTT
ATGACCCGGAACGTGATCCTTCGCGACCGGTGTTAGGTGTGGATCAGAGCGCACAGATGGGGCCATACACGTTGACCTTC
CGCGGGTTCAATATCGACCGCGAGGCAATGATGCGTGGTGAAGCGAAGGTTGGCGCCCGTGTCGAAGTTACTTATGAAGG
CCAGACCTTCGAGGTTGAGCCGCGGGTGGAAGTTGTCCCCAATCCGACCACGAATGAAGGTGAGTTGCAGTTCATTCCGG
TCACCCTACCCGGTGGCCACACCCTGCGTCTAGCGGAGCTTGATCCGACCAACCGCATGGTGCTTCTCGAAGGTAGTGGT
CCCGGCCTGGATGATCTGCCGGTGGTGCCGGCCAAGGCTGTCATTGCGGTGAGTGTCAAACCGCTGGTTGTGCTGGTCTG
GACTGGTGTTATCATGATGGTGATCGGCGGTGCAATCGCACTGGTACGGCGCTACCTTGAAGGTAGTCTGGCGCTGGCTG
GTGCACGAGTACGACTACCCAAAGCGTTGCCGGAACTGGCGGCTCAACTGGGCTGGCGCGGGGCCGGCGACTAG

Upstream 100 bases:

>100_bases
ATGAACCAGGCAAAGCCATAAGCGAAGGCGACAGCCGCAACACGGTCATTGCTGGTACGTTTTCACCGTCTATTGGCTTT
GACCGCTGGAAAGAGTTGCT

Downstream 100 bases:

>100_bases
GATGTGGACACCAGATCAGGATTATATGGTCAGAGAATACTGACCAAACGTGAGCATCTGTTGGTAGCTATCTGATGTGT
TTCAGCGTGTAATGATCGAT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 797; Mature: 797

Protein sequence:

>797_residues
MYLFGTFLLMASLGMTLLAIISYGLVLRGQRVALSYARFGVYAALAGVLMSWTLLITVFLARRFDLDYVYNYSSRDLEFF
FTIAASWAGQPGSFMIWLLWGSIASALLIRRTKHFEPYVLMVVMAIQAAIIGFVLVLNPFQPLVDPNTGVALTPGDGRGL
NPLLHNFWMIIHPPILFVGYALSMIPFAFALAALWRRDYDTWVKRALPWTLAAWAFLGLALLLGGYWAYETLGWGGYWGW
DPVENLSLVPWLILTALIHGMLVQRTHGGLRKTNLVLGVATYITVFYATFMTRSGVYANFSVHSFVAEGIFEGLVGFQIF
LLAVAIVSLLARWNDIPARPLSDKFFSRDSFFVLAIITIVMTALVVGIGTSMPVISAIPGVGHTLQEWMGRYFELDDGTL
MNPQAQPFEDGRFSLAPSFYQRTVPPLGVVAIVLLIVGPLLGWRDANLSHLLRALRWPAVFAVIAAVVAMIINVRDLLSL
AYVAGGVFAFGTNLVMIIRTLRGGWLRIGGYLAHLGFTVMAIGMVASSAYATPDTRLTLSPGESARLFGYEFIFNGYQLD
DQQRGVLDLTVSDGSGTFSARPYLYFNQRMGATMQTPSIHSYLWHDLYISPAGYDPERDPSRPVLGVDQSAQMGPYTLTF
RGFNIDREAMMRGEAKVGARVEVTYEGQTFEVEPRVEVVPNPTTNEGELQFIPVTLPGGHTLRLAELDPTNRMVLLEGSG
PGLDDLPVVPAKAVIAVSVKPLVVLVWTGVIMMVIGGAIALVRRYLEGSLALAGARVRLPKALPELAAQLGWRGAGD

Sequences:

>Translated_797_residues
MYLFGTFLLMASLGMTLLAIISYGLVLRGQRVALSYARFGVYAALAGVLMSWTLLITVFLARRFDLDYVYNYSSRDLEFF
FTIAASWAGQPGSFMIWLLWGSIASALLIRRTKHFEPYVLMVVMAIQAAIIGFVLVLNPFQPLVDPNTGVALTPGDGRGL
NPLLHNFWMIIHPPILFVGYALSMIPFAFALAALWRRDYDTWVKRALPWTLAAWAFLGLALLLGGYWAYETLGWGGYWGW
DPVENLSLVPWLILTALIHGMLVQRTHGGLRKTNLVLGVATYITVFYATFMTRSGVYANFSVHSFVAEGIFEGLVGFQIF
LLAVAIVSLLARWNDIPARPLSDKFFSRDSFFVLAIITIVMTALVVGIGTSMPVISAIPGVGHTLQEWMGRYFELDDGTL
MNPQAQPFEDGRFSLAPSFYQRTVPPLGVVAIVLLIVGPLLGWRDANLSHLLRALRWPAVFAVIAAVVAMIINVRDLLSL
AYVAGGVFAFGTNLVMIIRTLRGGWLRIGGYLAHLGFTVMAIGMVASSAYATPDTRLTLSPGESARLFGYEFIFNGYQLD
DQQRGVLDLTVSDGSGTFSARPYLYFNQRMGATMQTPSIHSYLWHDLYISPAGYDPERDPSRPVLGVDQSAQMGPYTLTF
RGFNIDREAMMRGEAKVGARVEVTYEGQTFEVEPRVEVVPNPTTNEGELQFIPVTLPGGHTLRLAELDPTNRMVLLEGSG
PGLDDLPVVPAKAVIAVSVKPLVVLVWTGVIMMVIGGAIALVRRYLEGSLALAGARVRLPKALPELAAQLGWRGAGD
>Mature_797_residues
MYLFGTFLLMASLGMTLLAIISYGLVLRGQRVALSYARFGVYAALAGVLMSWTLLITVFLARRFDLDYVYNYSSRDLEFF
FTIAASWAGQPGSFMIWLLWGSIASALLIRRTKHFEPYVLMVVMAIQAAIIGFVLVLNPFQPLVDPNTGVALTPGDGRGL
NPLLHNFWMIIHPPILFVGYALSMIPFAFALAALWRRDYDTWVKRALPWTLAAWAFLGLALLLGGYWAYETLGWGGYWGW
DPVENLSLVPWLILTALIHGMLVQRTHGGLRKTNLVLGVATYITVFYATFMTRSGVYANFSVHSFVAEGIFEGLVGFQIF
LLAVAIVSLLARWNDIPARPLSDKFFSRDSFFVLAIITIVMTALVVGIGTSMPVISAIPGVGHTLQEWMGRYFELDDGTL
MNPQAQPFEDGRFSLAPSFYQRTVPPLGVVAIVLLIVGPLLGWRDANLSHLLRALRWPAVFAVIAAVVAMIINVRDLLSL
AYVAGGVFAFGTNLVMIIRTLRGGWLRIGGYLAHLGFTVMAIGMVASSAYATPDTRLTLSPGESARLFGYEFIFNGYQLD
DQQRGVLDLTVSDGSGTFSARPYLYFNQRMGATMQTPSIHSYLWHDLYISPAGYDPERDPSRPVLGVDQSAQMGPYTLTF
RGFNIDREAMMRGEAKVGARVEVTYEGQTFEVEPRVEVVPNPTTNEGELQFIPVTLPGGHTLRLAELDPTNRMVLLEGSG
PGLDDLPVVPAKAVIAVSVKPLVVLVWTGVIMMVIGGAIALVRRYLEGSLALAGARVRLPKALPELAAQLGWRGAGD

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=634, Percent_Identity=28.8643533123028, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1790511, Length=409, Percent_Identity=30.0733496332518, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 87623; Mature: 87623

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLFGTFLLMASLGMTLLAIISYGLVLRGQRVALSYARFGVYAALAGVLMSWTLLITVFL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRFDLDYVYNYSSRDLEFFFTIAASWAGQPGSFMIWLLWGSIASALLIRRTKHFEPYVL
HHHCCCCEEECCCCCCEEEEEEEEHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHH
MVVMAIQAAIIGFVLVLNPFQPLVDPNTGVALTPGDGRGLNPLLHNFWMIIHPPILFVGY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALSMIPFAFALAALWRRDYDTWVKRALPWTLAAWAFLGLALLLGGYWAYETLGWGGYWGW
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
DPVENLSLVPWLILTALIHGMLVQRTHGGLRKTNLVLGVATYITVFYATFMTRSGVYANF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
SVHSFVAEGIFEGLVGFQIFLLAVAIVSLLARWNDIPARPLSDKFFSRDSFFVLAIITIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHH
MTALVVGIGTSMPVISAIPGVGHTLQEWMGRYFELDDGTLMNPQAQPFEDGRFSLAPSFY
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHEEECCCCCEECCCCCCCCCCCEECCCHHH
QRTVPPLGVVAIVLLIVGPLLGWRDANLSHLLRALRWPAVFAVIAAVVAMIINVRDLLSL
HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYVAGGVFAFGTNLVMIIRTLRGGWLRIGGYLAHLGFTVMAIGMVASSAYATPDTRLTLS
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
PGESARLFGYEFIFNGYQLDDQQRGVLDLTVSDGSGTFSARPYLYFNQRMGATMQTPSIH
CCCCCEEEEEEEEECCEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCEECCCCHH
SYLWHDLYISPAGYDPERDPSRPVLGVDQSAQMGPYTLTFRGFNIDREAMMRGEAKVGAR
HHHHHHEEECCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCE
VEVTYEGQTFEVEPRVEVVPNPTTNEGELQFIPVTLPGGHTLRLAELDPTNRMVLLEGSG
EEEEECCCEEEECCCEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEECCC
PGLDDLPVVPAKAVIAVSVKPLVVLVWTGVIMMVIGGAIALVRRYLEGSLALAGARVRLP
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECH
KALPELAAQLGWRGAGD
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYLFGTFLLMASLGMTLLAIISYGLVLRGQRVALSYARFGVYAALAGVLMSWTLLITVFL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRFDLDYVYNYSSRDLEFFFTIAASWAGQPGSFMIWLLWGSIASALLIRRTKHFEPYVL
HHHCCCCEEECCCCCCEEEEEEEEHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHH
MVVMAIQAAIIGFVLVLNPFQPLVDPNTGVALTPGDGRGLNPLLHNFWMIIHPPILFVGY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
ALSMIPFAFALAALWRRDYDTWVKRALPWTLAAWAFLGLALLLGGYWAYETLGWGGYWGW
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
DPVENLSLVPWLILTALIHGMLVQRTHGGLRKTNLVLGVATYITVFYATFMTRSGVYANF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
SVHSFVAEGIFEGLVGFQIFLLAVAIVSLLARWNDIPARPLSDKFFSRDSFFVLAIITIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHH
MTALVVGIGTSMPVISAIPGVGHTLQEWMGRYFELDDGTLMNPQAQPFEDGRFSLAPSFY
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHEEECCCCCEECCCCCCCCCCCEECCCHHH
QRTVPPLGVVAIVLLIVGPLLGWRDANLSHLLRALRWPAVFAVIAAVVAMIINVRDLLSL
HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYVAGGVFAFGTNLVMIIRTLRGGWLRIGGYLAHLGFTVMAIGMVASSAYATPDTRLTLS
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
PGESARLFGYEFIFNGYQLDDQQRGVLDLTVSDGSGTFSARPYLYFNQRMGATMQTPSIH
CCCCCEEEEEEEEECCEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCEECCCCHH
SYLWHDLYISPAGYDPERDPSRPVLGVDQSAQMGPYTLTFRGFNIDREAMMRGEAKVGAR
HHHHHHEEECCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCE
VEVTYEGQTFEVEPRVEVVPNPTTNEGELQFIPVTLPGGHTLRLAELDPTNRMVLLEGSG
EEEEECCCEEEECCCEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEECCC
PGLDDLPVVPAKAVIAVSVKPLVVLVWTGVIMMVIGGAIALVRRYLEGSLALAGARVRLP
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECH
KALPELAAQLGWRGAGD
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]