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The map label for this gene is 222523901

Identifier: 222523901

GI number: 222523901

Start: 747683

End: 748279

Strand: Reverse

Name: 222523901

Synonym: Chy400_0610

Alternate gene names: NA

Gene position: 748279-747683 (Counterclockwise)

Preceding gene: 222523902

Following gene: 222523900

Centisome position: 14.2

GC content: 52.93

Gene sequence:

>597_bases
ATGAAACATCTCATCACCTTAATCCTTGCCGTATTGAGCGCCCTGCTGCTCAGCGGTTGTGGCGCATATGAATTTCGCGG
TACTGTGCTCGAACCGCCGAATCCGGCTCCAGAAATACCGCTAGTCGATCAGTTTGGCAATGAGTTTCGTCTGAGCAACT
ATCGTGACAAGATTGTTCTGGTCTTTTTTGGGTTTACCCATTGTCCTGACATCTGTCCGACCGCACTCGGTGACTTGAAG
CGGGTGATGGAGAAGCTTGGTAATGATGCGGCGAAGGTGCAGGTGGTCTTTGTCTCGGTCGATCCTGAGCGCGATACGCC
TGATTTGATGCAACGTTATCTGGCAGCGTTCAACCCAACGTTTCTGGGATTGAACGGAGATCGGGCGGTGCTGGAACAGG
TCTACAAAAGCTATGGGGTAACGGTCATCAAACGCGAGCTACCCAATTCGGGTCTGGGCTATACCATTGACCATTCTGGC
TACATTTATGCCATCGATCAGGCCGGCAACTGGCGACTACTCTGGGCACATGGCACACCGGTGGATGACATTGTGAGCGA
TGTGCAGGCACTGTTGCGCAATCCACCGCGTGGCTAG

Upstream 100 bases:

>100_bases
GACGACATCTTCGGTTCGCCCTTGAATGTGATAAACAGGCAGAGCGTGGGGATGGGCAGCGGCCCGTCTCCACCCTATCA
GTGTAGTGCAGGTAACCGAT

Downstream 100 bases:

>100_bases
ACTGGCAGTGCGAGTAATGACAACATCATATATGAATGAAGGAACGCGCCACCGGCAGGAGCTTAGCAAACAGATGGCTC
ACCCTTTCCAACAGCGGCTG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKHLITLILAVLSALLLSGCGAYEFRGTVLEPPNPAPEIPLVDQFGNEFRLSNYRDKIVLVFFGFTHCPDICPTALGDLK
RVMEKLGNDAAKVQVVFVSVDPERDTPDLMQRYLAAFNPTFLGLNGDRAVLEQVYKSYGVTVIKRELPNSGLGYTIDHSG
YIYAIDQAGNWRLLWAHGTPVDDIVSDVQALLRNPPRG

Sequences:

>Translated_198_residues
MKHLITLILAVLSALLLSGCGAYEFRGTVLEPPNPAPEIPLVDQFGNEFRLSNYRDKIVLVFFGFTHCPDICPTALGDLK
RVMEKLGNDAAKVQVVFVSVDPERDTPDLMQRYLAAFNPTFLGLNGDRAVLEQVYKSYGVTVIKRELPNSGLGYTIDHSG
YIYAIDQAGNWRLLWAHGTPVDDIVSDVQALLRNPPRG
>Mature_198_residues
MKHLITLILAVLSALLLSGCGAYEFRGTVLEPPNPAPEIPLVDQFGNEFRLSNYRDKIVLVFFGFTHCPDICPTALGDLK
RVMEKLGNDAAKVQVVFVSVDPERDTPDLMQRYLAAFNPTFLGLNGDRAVLEQVYKSYGVTVIKRELPNSGLGYTIDHSG
YIYAIDQAGNWRLLWAHGTPVDDIVSDVQALLRNPPRG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=136, Percent_Identity=38.9705882352941, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI281182722, Length=136, Percent_Identity=38.9705882352941, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI281182716, Length=136, Percent_Identity=38.9705882352941, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI153791313, Length=136, Percent_Identity=38.9705882352941, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI4759068, Length=155, Percent_Identity=27.741935483871, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531419, Length=138, Percent_Identity=29.7101449275362, Blast_Score=76, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319498, Length=178, Percent_Identity=34.2696629213483, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=155, Percent_Identity=33.5483870967742, Blast_Score=92, Evalue=7e-20,
Organism=Drosophila melanogaster, GI19920710, Length=152, Percent_Identity=30.9210526315789, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21947; Mature: 21947

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLITLILAVLSALLLSGCGAYEFRGTVLEPPNPAPEIPLVDQFGNEFRLSNYRDKIVL
CHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCCCCCCCCHHHCCCCEECCCCCCEEEE
VFFGFTHCPDICPTALGDLKRVMEKLGNDAAKVQVVFVSVDPERDTPDLMQRYLAAFNPT
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCE
FLGLNGDRAVLEQVYKSYGVTVIKRELPNSGLGYTIDHSGYIYAIDQAGNWRLLWAHGTP
EEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCC
VDDIVSDVQALLRNPPRG
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKHLITLILAVLSALLLSGCGAYEFRGTVLEPPNPAPEIPLVDQFGNEFRLSNYRDKIVL
CHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCCCCCCCCHHHCCCCEECCCCCCEEEE
VFFGFTHCPDICPTALGDLKRVMEKLGNDAAKVQVVFVSVDPERDTPDLMQRYLAAFNPT
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCE
FLGLNGDRAVLEQVYKSYGVTVIKRELPNSGLGYTIDHSGYIYAIDQAGNWRLLWAHGTP
EEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCC
VDDIVSDVQALLRNPPRG
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA