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The map label for this gene is hofB [C]

Identifier: 222523840

GI number: 222523840

Start: 654341

End: 655738

Strand: Reverse

Name: hofB [C]

Synonym: Chy400_0548

Alternate gene names: 222523840

Gene position: 655738-654341 (Counterclockwise)

Preceding gene: 222523841

Following gene: 222523839

Centisome position: 12.45

GC content: 51.93

Gene sequence:

>1398_bases
ATGTCGTTGTTGAAGCGAATTGGTGGTGGTGTTCCTGCAACAACCGAACCGGCTGTGCCACGAACCCCAGTCCGACCAGA
AGCAACAGGTCGCTTGCAACCGCCGGTTGGTGCTTTTGGTACCGATGACACGTTTCGCGAGTTGCGCTCGCGGGTGCAGG
ATCGTTTGATTAACGAATTGAATCCTCAAATTGATTTGAGTAACCCGGCAAAGGTGCGCAAACAGGTTGAGGAGATTTTT
AATGCGATCCTCGACAGCGAGAGTATTGTCCTTTCGCGCACCGAACGCCAGCGTCTGTTTGAGAGTATCACTGCCGATAT
TATCGGTCTTGGCCCAATCGAACCACTGCTGGCTGATGAAGATGTCAGCGAAATTATGGTCAACGGCCCGAAACAGGTGT
ATATCGAGAAGAAGGGTAAGTTGATCAAAACCGATATTACCTTCACCGATGATGATCACGTCATGCGGATTATCGACCGC
ATTGTCGCGCCGCTTGGTCGTCGGGTCGATGAGTCGTCACCGATGGTCGATGCCCGCCTAAAGGATGGCTCGCGCGTTAA
TGTTGTCATTCGGCCGCTGGCACTCAATGGGCCAACCATCACCATTCGTAAGTTCCGCAAAGATAAACTGACCGTGCAGG
ACCTGGTGCGCTTCGGCTCGATGTCGCAAGACATGGCCGATTTCCTGGCAGCTTGTGTTCAGGCCCGTTTGAATATTGTC
GTTGCCGGTGGTACCGGCTCAGGGAAAACTACCTTGCTGAATGTGCTCTCGTCGTTTATCCCTGAAGATGAACGGATTAT
CACGGTTGAAAATGCCGCTGAATTGCAGTTACGCCAGGATCATGTGGTGACGCTTGAGTCGCGACCACCAAATGTGGAAG
GAAAAGGCGAGGTGACAATCCGTGACCTGGTTATTAACTGTCTACGTATGCGACCAGAACGGATTATTGTCGGTGAGTGT
CGTGGTGGCGAGACCCTCGACATGTTGCAGGCAATGAATACCGGTCACGACGGTTCAATGACGACCATTCACGCCAATAC
GCCACGCGATGCGGTGAGTCGTATTGAAACAATGTGTCTGATGGCTGGTATGGACTTGCCGGCACGGGCGATCCGTGAGC
AGATTGCTTCGGCTATTCATGTCTTCGTCCAGCAATCACGCCTGAAAGATGGCTCGCGCAAAGTTACCCAGATCACCGAA
GTCGCTGGCATGGAAGGTGATGTGGTTGTCTTGCAAGACATCTTTGTCTTTGAACAAACCGGTATTGATGAAAAAGGGAA
GATTGTTGGTCAGTTGCGCCCAACCGGGGTTCGACCACGTTTTCTCGAAAAGTTCGAGGCGCTCAACATCTTCCTGCCGC
CGACCATTTTTGGCTCGTCGGAACGTTTCAGTTTCTAA

Upstream 100 bases:

>100_bases
AAAGCAGCGCAGTGGCTTATTCGGTAATTTGATCCCCCGGCGATAAACAATACCGGATTCTGCCTGATACGCTGCTTTAC
CACTGAGAAAGGTGAGCGCA

Downstream 100 bases:

>100_bases
CTACCGCGACGATTGGCGGCGTGAGAAGGAGGTGGCGCACGTATGGATTTGTTGCTCTCGCCTGAGATGATGCCGGTGAC
GTTGGGTGCCCTGGGGTTAC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSLLKRIGGGVPATTEPAVPRTPVRPEATGRLQPPVGAFGTDDTFRELRSRVQDRLINELNPQIDLSNPAKVRKQVEEIF
NAILDSESIVLSRTERQRLFESITADIIGLGPIEPLLADEDVSEIMVNGPKQVYIEKKGKLIKTDITFTDDDHVMRIIDR
IVAPLGRRVDESSPMVDARLKDGSRVNVVIRPLALNGPTITIRKFRKDKLTVQDLVRFGSMSQDMADFLAACVQARLNIV
VAGGTGSGKTTLLNVLSSFIPEDERIITVENAAELQLRQDHVVTLESRPPNVEGKGEVTIRDLVINCLRMRPERIIVGEC
RGGETLDMLQAMNTGHDGSMTTIHANTPRDAVSRIETMCLMAGMDLPARAIREQIASAIHVFVQQSRLKDGSRKVTQITE
VAGMEGDVVVLQDIFVFEQTGIDEKGKIVGQLRPTGVRPRFLEKFEALNIFLPPTIFGSSERFSF

Sequences:

>Translated_465_residues
MSLLKRIGGGVPATTEPAVPRTPVRPEATGRLQPPVGAFGTDDTFRELRSRVQDRLINELNPQIDLSNPAKVRKQVEEIF
NAILDSESIVLSRTERQRLFESITADIIGLGPIEPLLADEDVSEIMVNGPKQVYIEKKGKLIKTDITFTDDDHVMRIIDR
IVAPLGRRVDESSPMVDARLKDGSRVNVVIRPLALNGPTITIRKFRKDKLTVQDLVRFGSMSQDMADFLAACVQARLNIV
VAGGTGSGKTTLLNVLSSFIPEDERIITVENAAELQLRQDHVVTLESRPPNVEGKGEVTIRDLVINCLRMRPERIIVGEC
RGGETLDMLQAMNTGHDGSMTTIHANTPRDAVSRIETMCLMAGMDLPARAIREQIASAIHVFVQQSRLKDGSRKVTQITE
VAGMEGDVVVLQDIFVFEQTGIDEKGKIVGQLRPTGVRPRFLEKFEALNIFLPPTIFGSSERFSF
>Mature_464_residues
SLLKRIGGGVPATTEPAVPRTPVRPEATGRLQPPVGAFGTDDTFRELRSRVQDRLINELNPQIDLSNPAKVRKQVEEIFN
AILDSESIVLSRTERQRLFESITADIIGLGPIEPLLADEDVSEIMVNGPKQVYIEKKGKLIKTDITFTDDDHVMRIIDRI
VAPLGRRVDESSPMVDARLKDGSRVNVVIRPLALNGPTITIRKFRKDKLTVQDLVRFGSMSQDMADFLAACVQARLNIVV
AGGTGSGKTTLLNVLSSFIPEDERIITVENAAELQLRQDHVVTLESRPPNVEGKGEVTIRDLVINCLRMRPERIIVGECR
GGETLDMLQAMNTGHDGSMTTIHANTPRDAVSRIETMCLMAGMDLPARAIREQIASAIHVFVQQSRLKDGSRKVTQITEV
AGMEGDVVVLQDIFVFEQTGIDEKGKIVGQLRPTGVRPRFLEKFEALNIFLPPTIFGSSERFSF

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 51449; Mature: 51318

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLKRIGGGVPATTEPAVPRTPVRPEATGRLQPPVGAFGTDDTFRELRSRVQDRLINEL
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
NPQIDLSNPAKVRKQVEEIFNAILDSESIVLSRTERQRLFESITADIIGLGPIEPLLADE
CCCEECCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCC
DVSEIMVNGPKQVYIEKKGKLIKTDITFTDDDHVMRIIDRIVAPLGRRVDESSPMVDARL
CHHHHHHCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
KDGSRVNVVIRPLALNGPTITIRKFRKDKLTVQDLVRFGSMSQDMADFLAACVQARLNIV
CCCCEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCEEEE
VAGGTGSGKTTLLNVLSSFIPEDERIITVENAAELQLRQDHVVTLESRPPNVEGKGEVTI
EECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHEEEECCCEEEECCCCCCCCCCCCEEH
RDLVINCLRMRPERIIVGECRGGETLDMLQAMNTGHDGSMTTIHANTPRDAVSRIETMCL
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
MAGMDLPARAIREQIASAIHVFVQQSRLKDGSRKVTQITEVAGMEGDVVVLQDIFVFEQT
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHC
GIDEKGKIVGQLRPTGVRPRFLEKFEALNIFLPPTIFGSSERFSF
CCCCCCCEEEEECCCCCCHHHHHHHHHCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SLLKRIGGGVPATTEPAVPRTPVRPEATGRLQPPVGAFGTDDTFRELRSRVQDRLINEL
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
NPQIDLSNPAKVRKQVEEIFNAILDSESIVLSRTERQRLFESITADIIGLGPIEPLLADE
CCCEECCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCC
DVSEIMVNGPKQVYIEKKGKLIKTDITFTDDDHVMRIIDRIVAPLGRRVDESSPMVDARL
CHHHHHHCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
KDGSRVNVVIRPLALNGPTITIRKFRKDKLTVQDLVRFGSMSQDMADFLAACVQARLNIV
CCCCEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCEEEE
VAGGTGSGKTTLLNVLSSFIPEDERIITVENAAELQLRQDHVVTLESRPPNVEGKGEVTI
EECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHEEEECCCEEEECCCCCCCCCCCCEEH
RDLVINCLRMRPERIIVGECRGGETLDMLQAMNTGHDGSMTTIHANTPRDAVSRIETMCL
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
MAGMDLPARAIREQIASAIHVFVQQSRLKDGSRKVTQITEVAGMEGDVVVLQDIFVFEQT
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHC
GIDEKGKIVGQLRPTGVRPRFLEKFEALNIFLPPTIFGSSERFSF
CCCCCCCEEEEECCCCCCHHHHHHHHHCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]