| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is recG [H]
Identifier: 222523571
GI number: 222523571
Start: 332634
End: 335252
Strand: Direct
Name: recG [H]
Synonym: Chy400_0277
Alternate gene names: 222523571
Gene position: 332634-335252 (Clockwise)
Preceding gene: 222523570
Following gene: 222523572
Centisome position: 6.31
GC content: 58.53
Gene sequence:
>2619_bases ATGACCGAGGCTGAGCGACAGCAGGTTATAGCGCTCGGCAGGCTACTGGCCGCCGAGCGCCGTGATGGATGCGCTGATCG GGTGACAACTGATGGCCTGGTGGCGTACCTCAACCAGTGGAGTGCAGCGGCAGGGAGTGCAGCACGTTTGCCCGCTGTTC AGCGTGCACTTGGTTGTCTGGTCGGCTACGATGGCATGACGCTGGTCGAGCGGGATCAGGCGTTGGCCGAGGCAATCGAA ATCCTGCGCTCACTCTTTCGCACTGCCCCTACTGCACCGGTTGAAACAACAGTGCCGCCATCGCCGGCAGTCGATCCTAC AGCCAATGCCGGCCACGTACCGGTAACTAAGCGCAACACTTCTGCCCGTCAGTCACGCAAGCGAGCAGCTAACGTTGACC AGCGCCCGCTGGCTGAACTCAATCTCGATGCACCGCTTGAGCAGATCGCAGGCATCGACTGGCGGCTGGTCGGTGGTTTT CGGCGCCTGGGAGTGCGTACTATCCGCGATCTGCTGTACCACTTTCCCCGGCGCTACGATGATGTGAGGAACCGGCGTTC GATCAGCGAATTACAGGTCGGGGCCGAGGAAACGGTGATCGGTGAGGTGACCGATGTGCGCACTATCGGCGCCGGCCCCA AATTGCGGGTACGAGTCGAGGTCAGCGACGAGACCGGATCAATCGAGGCGATCTTTTTCAATCAACGCTGGATTGCGCAG CAGATTCGGGTTGGGCAGACGATTGCGCTCAGTGGCAAAGTGACAACCTTTGGCGGGAAGCGGCAGTTTAGTAGTCCACG CTGGGAACGTTATACACCCGATCCTGATGCACTCTTACACACTGGCCGCCTGGTACCGATCCATCCCTTAACCCAGGGCT TGCACGAGAACCAGGTACGTCGCTTCATCAAGCAGGTGGTTGATACAATGGCCCCACAGGTCGAGGATCATCTGCCGCCT GTGCGCCTCCAGCACGCCAGATTGCTACCGCTAGGTGAAGCACTGGCACAAATCCATTTTCCGACCGACCATACCAGTCT GGCTGCGGCACGTCGCCGGCTGGGGTTTGACGAATTTCTGTTTATTCAGATCGGTGTGTTGCAGCGTAAACGCCTCTGGC AGCAGGAGATGGGCTATGCCTTTACCATCGACTCGCAGGTACACGCCGAACTCCAACGCCTGTTGCCGTTTCAATTGACC ACTGCCCAACAGCGGGCAATCGAGGAAATCTTTAGCGACCTCCGCCGTCCATCACCGATGGCTCGCTTGCTGCAAGGCGA TGTTGGCAGCGGTAAAACGGTGGTGGCCGCAGCCGCGCTGCTGCAGGCCGTTGCCAATGGCTTCCAGGGCGCACTGATGG CACCAACTGAAATTCTGGCCGAGCAACACGCCAAAAACCTGAAACAGCTTCTCAGCCGGGTGCGCGTGCCACGTAAGACA ACCTCAGCCACTGCTTCTTCCGCGTATCAGCAAGCCGATTGGCGATCACTGCTCGATCCTGAAGAAGCAGCGCAACTGGC TGAGATTATCTCCATTCTCGGCATGTCGCCCGAAGAGGATATGGGTGGGCACGGAGTACGGGTCGCTTTGCTCACCGGCA GCCTGGGGACACGCGAGCGACGGCGGGTGCTGGAAGGGATTGCGCGCGGCGAGATCGACCTGGTGGTAGGCACCCATGCC CTGATCACCGAAACGGTGCAATTTGCTCAGCTAGGGCTGGTGGTGGTTGACGAGCAGCATCGGTTTGGTGTAGAGCAACG TCTGCGCCTGAAGAACAAAGGCTACAATCCGCATATGCTGGTGATGACTGCCACCCCGATTCCGCGCACGCTCACGATGA CTATCTACGGCGATCTGGACGTATCGGTGCTCGACGAGCGTCCACCGGGCCGACAAGAGATTCGGACAAAACGGGTGGGC CGGGCTGAGCGAGCGAAGGTCTACCGGCATATTCGGAAACAGGTCGCTGAAGGACGCCAGGTGTATGTCATCTGCCCGCT GGTTGAAGAGAGTGAAAAACTTGACCTGCCCTCAGCCGAAGAGATGTATGAACGCCTTCAGCACGAAGTCTTTCCCGACT TGCGGGTGGCATTGCTGCACGGCAAACTATCGGCCCGCGAGAAAGATGATGTAATGCGGGCATTTCGCGATCACCAGTAC GACATTCTGGTCGCAACTGCGGTGATCGAGGTCGGGATTGATGTGCCGAACGCCACCACGATTGTTATTGAGGGTGCCGA ACGGTTCGGCCTGGCGCAATTGCACCAGTTTCGCGGGCGTGTCGGACGTGGTCATCATCAGAGTTACTGCATCCTGATCA GCGACAGCGATAATCAGCAGTCAAAAGAGCGATTGGCGGCGCTTGAGCAAACAACCGATGGCTTCAAGCTGGCCGAAATT GATTTACAATTGCGCGGGCCGGGTGAATTTTTCGGCACGCGCCAGAGTGGTACTCCCGATCTGAAGATGGCCCAACAGGG CGATACCCGTCTGCTGGCCGAAGCGCGGGCATTGGCCGACGCCATTCTTGCCGATGATCCTGAACTTAAGCGTCCTGAAC ATGACCTTTTGCGGCGAAAAGTGAATGACTTTTGGGCTGCGGCGACGCAGTCCGGTTGA
Upstream 100 bases:
>100_bases CCCGTGATCGAGTCCAGGTGTCGCGGATGGGGCCGGCAATTGCTGCCTGCCTCGGTCCCGGTGCAATGGCAGTGACCGCG TTTGAAGGTTTCGATGAGGC
Downstream 100 bases:
>100_bases AGCGATGAGGCTTGAAGATGCAGGTACACACTATCAGCATCCCCCCGGCATTAGGTGAGGCGACGTTACTGGAATGGCTG GTTGCCGTTGGCGAGTCTGT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 872; Mature: 871
Protein sequence:
>872_residues MTEAERQQVIALGRLLAAERRDGCADRVTTDGLVAYLNQWSAAAGSAARLPAVQRALGCLVGYDGMTLVERDQALAEAIE ILRSLFRTAPTAPVETTVPPSPAVDPTANAGHVPVTKRNTSARQSRKRAANVDQRPLAELNLDAPLEQIAGIDWRLVGGF RRLGVRTIRDLLYHFPRRYDDVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQRWIAQ QIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVRRFIKQVVDTMAPQVEDHLPP VRLQHARLLPLGEALAQIHFPTDHTSLAAARRRLGFDEFLFIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLT TAQQRAIEEIFSDLRRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKT TSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRERRRVLEGIARGEIDLVVGTHA LITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVG RAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQY DILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQSKERLAALEQTTDGFKLAEI DLQLRGPGEFFGTRQSGTPDLKMAQQGDTRLLAEARALADAILADDPELKRPEHDLLRRKVNDFWAAATQSG
Sequences:
>Translated_872_residues MTEAERQQVIALGRLLAAERRDGCADRVTTDGLVAYLNQWSAAAGSAARLPAVQRALGCLVGYDGMTLVERDQALAEAIE ILRSLFRTAPTAPVETTVPPSPAVDPTANAGHVPVTKRNTSARQSRKRAANVDQRPLAELNLDAPLEQIAGIDWRLVGGF RRLGVRTIRDLLYHFPRRYDDVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQRWIAQ QIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVRRFIKQVVDTMAPQVEDHLPP VRLQHARLLPLGEALAQIHFPTDHTSLAAARRRLGFDEFLFIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLT TAQQRAIEEIFSDLRRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKT TSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRERRRVLEGIARGEIDLVVGTHA LITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVG RAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQY DILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQSKERLAALEQTTDGFKLAEI DLQLRGPGEFFGTRQSGTPDLKMAQQGDTRLLAEARALADAILADDPELKRPEHDLLRRKVNDFWAAATQSG >Mature_871_residues TEAERQQVIALGRLLAAERRDGCADRVTTDGLVAYLNQWSAAAGSAARLPAVQRALGCLVGYDGMTLVERDQALAEAIEI LRSLFRTAPTAPVETTVPPSPAVDPTANAGHVPVTKRNTSARQSRKRAANVDQRPLAELNLDAPLEQIAGIDWRLVGGFR RLGVRTIRDLLYHFPRRYDDVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQRWIAQQ IRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVRRFIKQVVDTMAPQVEDHLPPV RLQHARLLPLGEALAQIHFPTDHTSLAAARRRLGFDEFLFIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLTT AQQRAIEEIFSDLRRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKTT SATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRERRRVLEGIARGEIDLVVGTHAL ITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVGR AERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQYD ILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQSKERLAALEQTTDGFKLAEID LQLRGPGEFFGTRQSGTPDLKMAQQGDTRLLAEARALADAILADDPELKRPEHDLLRRKVNDFWAAATQSG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=699, Percent_Identity=37.6251788268956, Blast_Score=402, Evalue=1e-113, Organism=Escherichia coli, GI1787357, Length=447, Percent_Identity=36.4653243847875, Blast_Score=266, Evalue=4e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 97079; Mature: 96948
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAERQQVIALGRLLAAERRDGCADRVTTDGLVAYLNQWSAAAGSAARLPAVQRALGCL CCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VGYDGMTLVERDQALAEAIEILRSLFRTAPTAPVETTVPPSPAVDPTANAGHVPVTKRNT HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC SARQSRKRAANVDQRPLAELNLDAPLEQIAGIDWRLVGGFRRLGVRTIRDLLYHFPRRYD HHHHHHHHHCCCCCCCHHHCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH DVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQRWIAQ HHHHHHHHHHHHCCCCHHEEECHHHHEEECCCCEEEEEEEECCCCCCEEEEEECCHHHHH QIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVR HHHCCCEEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCHHHHCCCHHHHH RFIKQVVDTMAPQVEDHLPPVRLQHARLLPLGEALAQIHFPTDHTSLAAARRRLGFDEFL HHHHHHHHHHCCHHHHCCCCCEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHCCCCCEE FIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLTTAQQRAIEEIFSDLRRPSPM EHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH ARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKT HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC TSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRER CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHH RRVLEGIARGEIDLVVGTHALITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHML HHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHCCHHHHHHHHCCCCCCEEE VMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVGRAERAKVYRHIRKQVAEGRQ EEECCCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCE VYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQY EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCC DILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQ HHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH SKERLAALEQTTDGFKLAEIDLQLRGPGEFFGTRQSGTPDLKMAQQGDTRLLAEARALAD HHHHHHHHHHCCCCCEEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AILADDPELKRPEHDLLRRKVNDFWAAATQSG HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TEAERQQVIALGRLLAAERRDGCADRVTTDGLVAYLNQWSAAAGSAARLPAVQRALGCL CCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VGYDGMTLVERDQALAEAIEILRSLFRTAPTAPVETTVPPSPAVDPTANAGHVPVTKRNT HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC SARQSRKRAANVDQRPLAELNLDAPLEQIAGIDWRLVGGFRRLGVRTIRDLLYHFPRRYD HHHHHHHHHCCCCCCCHHHCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH DVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQRWIAQ HHHHHHHHHHHHCCCCHHEEECHHHHEEECCCCEEEEEEEECCCCCCEEEEEECCHHHHH QIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVR HHHCCCEEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCHHHHCCCHHHHH RFIKQVVDTMAPQVEDHLPPVRLQHARLLPLGEALAQIHFPTDHTSLAAARRRLGFDEFL HHHHHHHHHHCCHHHHCCCCCEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHCCCCCEE FIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLTTAQQRAIEEIFSDLRRPSPM EHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH ARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKT HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC TSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRER CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHH RRVLEGIARGEIDLVVGTHALITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHML HHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHCCHHHHHHHHCCCCCCEEE VMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVGRAERAKVYRHIRKQVAEGRQ EEECCCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCE VYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQY EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCC DILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSDNQQ HHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH SKERLAALEQTTDGFKLAEIDLQLRGPGEFFGTRQSGTPDLKMAQQGDTRLLAEARALAD HHHHHHHHHHCCCCCEEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AILADDPELKRPEHDLLRRKVNDFWAAATQSG HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]