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The map label for this gene is kaiC [H]

Identifier: 222523548

GI number: 222523548

Start: 301832

End: 303280

Strand: Reverse

Name: kaiC [H]

Synonym: Chy400_0254

Alternate gene names: 222523548

Gene position: 303280-301832 (Counterclockwise)

Preceding gene: 222523551

Following gene: 222523547

Centisome position: 5.76

GC content: 49.97

Gene sequence:

>1449_bases
ATGGAACAGGCAGCAACGCAACGTCTCGCAACTGGTATCCCCGGCCTCGACGAAATTTGTGGTGGTGGATTGGTGCCACG
TTACGCTTACCTGGTGCGTGGCGGGCCGGGAACGGGAAAAACGACGCTTGGCCTCCATTTCCTGGCTGCCGGCGCGGCAA
ATGGCGAAACGACGCTATTTATCAGCCTCGAAGAGACCGAGAGTAAAATTCGCTGGAATGCAGCGCAAACAGGCATCAAT
CTCAATCAGGTTCATATCCTCGACCTCAGTCCATCATCTGATTTTTTTGCCAACACCCAAATCTACGACATCTTCTCACC
GGCTGAAGTAGAACGAGAACCGATTACGCGCCAGATTGTTGAGACCGTACAACGTCTGCAACCCACACGGGTCTTCCTTG
ACTCGATTACTCAGTTTCGCTATCTCACTCCTGATACCTTTCAATTCCGCAAGCAGGTTATCTCATTTCTGCGGTTTCTC
GCTGAACAGCGAACGACAGTTGTCTTTTCGGCTGAGAATAGTGCCGCCTTTCCTGATGATGATTTGCAGTATATTGCTGA
TGGTATCATCTCGCTCGAATTAACCAATACCGGTCGCTATCTGACCGTCAGCAAGATGCGCGGTTCATCGTTTGTGAGTG
GTCGTCATGCGATGCGTTTGACCACTCAGGGCTTGCAGGTATTCCCACGTATCATTCCAACCCCGTTGGTGGCCGGCCAT
GCTTTCACATTGATCCCTTCTGGAGTACCCGAACTTGATGAGTTGCTGAACGGTGGGGTTGAACGAGGCACGATCACACT
GATCACCGGCCCGTCGGGGGTGGGTAAAACGACCCTTGGTTTTCAATTTATGAAGGAGGCAGCCAGTCGCGGTGAGCGGT
CGATGGTCTTCTCATTTGAAGAAGAGATCGAGATTATGCAACAGCGTTGTGAGGCGGTGAATATTCCGGTTCGGGCAATG
CAAAAACAACAATTGCTGCGGATTGAGAAGATCGAGCCGCTTCAGTACAACCCGGCAGAGTTTGCCCAGCATGTACGCTA
CTTTATCGAACAAGAGCAGATTAAAGTTGTCATGATCGATAGTGTGACCGGCTACCGCCTGTGTATGCACGGTGAAGACT
TGATCAGTCAGTTGCATGCTCTGAGCAAATATTTGCAGAGTCGAGGCGTAACGGTCTTTTTAATCATGGATACAACCGAC
ATTGTGGGTGATTTCAAAGTTACTGAGATTGGCGCCAGTTATCTGGGCGACAATATCATCTTTTTGCGCTTTTTAGAGAT
TGAGGGTGAGCTGCGCAAGGCCATCGGGGTTTTGAAAAAACGGTTGGGTGATTTTGAGAAGACATTGCGCGAATTTGCGA
TTTCTCGTTATGGGATTAAAGTAGGGAAGCCGCTCACCAATTTACGCGGTATTCTAAGTGGAATGCCGACGTGGGTTGAT
AAGGCGTGA

Upstream 100 bases:

>100_bases
TACCCATCGATACATAGATGTTGCCTGACAACTCCTTGACGCTGACTTGTAAACAGATTAGTATGGATGCTATGTTGATT
GGTGGTAGTGGGGGATCATC

Downstream 100 bases:

>100_bases
GATTGGCCCGGCAGTTACCGGATGGTTTCGCCAACCTTCGGATGGGAGTTCCGAAAGGGTAATGATCCGCTACCCGACGA
TACAAAAGAATGAGTACATG

Product: putative circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MEQAATQRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLFISLEETESKIRWNAAQTGIN
LNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIVETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFL
AEQRTTVVFSAENSAAFPDDDLQYIADGIISLELTNTGRYLTVSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGH
AFTLIPSGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEIEIMQQRCEAVNIPVRAM
QKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMIDSVTGYRLCMHGEDLISQLHALSKYLQSRGVTVFLIMDTTD
IVGDFKVTEIGASYLGDNIIFLRFLEIEGELRKAIGVLKKRLGDFEKTLREFAISRYGIKVGKPLTNLRGILSGMPTWVD
KA

Sequences:

>Translated_482_residues
MEQAATQRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLFISLEETESKIRWNAAQTGIN
LNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIVETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFL
AEQRTTVVFSAENSAAFPDDDLQYIADGIISLELTNTGRYLTVSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGH
AFTLIPSGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEIEIMQQRCEAVNIPVRAM
QKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMIDSVTGYRLCMHGEDLISQLHALSKYLQSRGVTVFLIMDTTD
IVGDFKVTEIGASYLGDNIIFLRFLEIEGELRKAIGVLKKRLGDFEKTLREFAISRYGIKVGKPLTNLRGILSGMPTWVD
KA
>Mature_482_residues
MEQAATQRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLFISLEETESKIRWNAAQTGIN
LNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIVETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFL
AEQRTTVVFSAENSAAFPDDDLQYIADGIISLELTNTGRYLTVSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGH
AFTLIPSGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEIEIMQQRCEAVNIPVRAM
QKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMIDSVTGYRLCMHGEDLISQLHALSKYLQSRGVTVFLIMDTTD
IVGDFKVTEIGASYLGDNIIFLRFLEIEGELRKAIGVLKKRLGDFEKTLREFAISRYGIKVGKPLTNLRGILSGMPTWVD
KA

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 53732; Mature: 53732

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQAATQRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLF
CCHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHEEEECCCCCCEEEE
ISLEETESKIRWNAAQTGINLNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIV
EEEECCCCHHEEEHHHCCCCCCEEEEEEECCCCCCEECCEEEECCCCCCCCCCHHHHHHH
ETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFLAEQRTTVVFSAENSAAFPDD
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
DLQYIADGIISLELTNTGRYLTVSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGH
HHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCCCHHEEEEHHHHHHHHHHCCCCHHCCC
AFTLIPSGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFE
EEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHH
EEIEIMQQRCEAVNIPVRAMQKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMID
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEE
SVTGYRLCMHGEDLISQLHALSKYLQSRGVTVFLIMDTTDIVGDFKVTEIGASYLGDNII
CCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCEEHHHHHHHHHCCCEE
FLRFLEIEGELRKAIGVLKKRLGDFEKTLREFAISRYGIKVGKPLTNLRGILSGMPTWVD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHC
KA
CC
>Mature Secondary Structure
MEQAATQRLATGIPGLDEICGGGLVPRYAYLVRGGPGTGKTTLGLHFLAAGAANGETTLF
CCHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHEEEECCCCCCEEEE
ISLEETESKIRWNAAQTGINLNQVHILDLSPSSDFFANTQIYDIFSPAEVEREPITRQIV
EEEECCCCHHEEEHHHCCCCCCEEEEEEECCCCCCEECCEEEECCCCCCCCCCHHHHHHH
ETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFLAEQRTTVVFSAENSAAFPDD
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
DLQYIADGIISLELTNTGRYLTVSKMRGSSFVSGRHAMRLTTQGLQVFPRIIPTPLVAGH
HHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCCCHHEEEEHHHHHHHHHHCCCCHHCCC
AFTLIPSGVPELDELLNGGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFE
EEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHH
EEIEIMQQRCEAVNIPVRAMQKQQLLRIEKIEPLQYNPAEFAQHVRYFIEQEQIKVVMID
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEE
SVTGYRLCMHGEDLISQLHALSKYLQSRGVTVFLIMDTTDIVGDFKVTEIGASYLGDNII
CCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCEEHHHHHHHHHCCCEE
FLRFLEIEGELRKAIGVLKKRLGDFEKTLREFAISRYGIKVGKPLTNLRGILSGMPTWVD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHC
KA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917641 [H]