Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
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Accession | NC_012032 |
Length | 5,268,950 |
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The map label for this gene is ypdA [H]
Identifier: 222523531
GI number: 222523531
Start: 282673
End: 283767
Strand: Reverse
Name: ypdA [H]
Synonym: Chy400_0237
Alternate gene names: 222523531
Gene position: 283767-282673 (Counterclockwise)
Preceding gene: 222523533
Following gene: 222523529
Centisome position: 5.39
GC content: 55.71
Gene sequence:
>1095_bases ATGCACTACGAGGAATTACCGCTTACGGCTGAGCACGACGTGGCAATCGTTGGTGCCGGCCCGATTGGTCTCGAAGTAGC GGTCTGTCTCAAACAGGCCGGGGTTGATTATATTCAGTTCGATGCACATCAGATTGGGTATACGATGACGTGGTGGCCGC GCAATACCAGTTTCTTCAGCACGACCGAACGGCTGGCAATTGCCGGGGTGCCGATTCAAAACAATCATCAACAACGGATT ACCGGCGAAGAGTATCTGGCGTATTTGCGGTCGGTCGTCGAGCTGTTCGATCTGCATATCCAGAGCTACGAACCGGTAAG CGATCTGATTCCCGACCACGAGGGTTTTACGCTGATTACCCGACCGCATAGCGGTGAGCGTCGTTATCGTGCCCGGCGTG TGGTACTGGCTATCGGCGATATGCACTATCCGCACCGGCTCAATATTCCCGGTGAGGATTTACCGCACGTCAGTCACTAT TTTCGCGATCCACACGACTACTTTCGGCGTCGGTTGCTGATCGTTGGTGGCAAGAATTCGGCGGTCGAGGCGGCACTGCG TTGCTGGCGTGCCGGTGCTCAGGTGACGCTGGCGTATCGCCGATCACAACTAGATGCGCAGCGCGTGAAGCACTGGTTAT TGCCCGATTTTCTGGCGCAGGTTGAGGCAGGTACAATTCGGTTTTTAGCACGCACAACACCCGTTGCTATCGATAGCGGC GGCGTGGTGCTGGCACATACTGACGAAGATGGTCAACCAACCACTGATCACTTCTACCACCCGACCGATTTTGTGTTGCT GGCAACCGGCTTTCGTGGTGATCAGCGTCTGCTCGAACAGGCTGGCGTGGTCTTGCAAGGGCCGAATCGAGTTCCGCTCT ACAATCCGGCAACCATGGAGACGAACGTGCCGGGTTTGTATCTGGCCGGTACCGTTGCCGCCGGGATTCAGCAGCGCTAT ACGCTATTCATCGAGAATTCCCACGAGCATGCCGGCAAGATTACCCAGGCTCTGACCGGGCGCTGGCCGTCACGGTTGGG TGATGTGGCAACCCGAAATTATCAATTGAGTTTTGAGCAGATTGCGGCGAATTAA
Upstream 100 bases:
>100_bases TTCTACCGTCAGTCATGTACATCGAAGTTGAGATGGTCGTACCTGTTTCCAGGTATGATACACATGGAATAATTCATATC GTCAACGGAGGAAAGAGTTC
Downstream 100 bases:
>100_bases GCATTCTACTGCCGGATCGATCTTGCCAGAATTGCCCGGTTTGCAGTATAGTATGGGCATACGGGGCTGTAGCTCAATGG ATAGAGCACCGACCTTCTAA
Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MHYEELPLTAEHDVAIVGAGPIGLEVAVCLKQAGVDYIQFDAHQIGYTMTWWPRNTSFFSTTERLAIAGVPIQNNHQQRI TGEEYLAYLRSVVELFDLHIQSYEPVSDLIPDHEGFTLITRPHSGERRYRARRVVLAIGDMHYPHRLNIPGEDLPHVSHY FRDPHDYFRRRLLIVGGKNSAVEAALRCWRAGAQVTLAYRRSQLDAQRVKHWLLPDFLAQVEAGTIRFLARTTPVAIDSG GVVLAHTDEDGQPTTDHFYHPTDFVLLATGFRGDQRLLEQAGVVLQGPNRVPLYNPATMETNVPGLYLAGTVAAGIQQRY TLFIENSHEHAGKITQALTGRWPSRLGDVATRNYQLSFEQIAAN
Sequences:
>Translated_364_residues MHYEELPLTAEHDVAIVGAGPIGLEVAVCLKQAGVDYIQFDAHQIGYTMTWWPRNTSFFSTTERLAIAGVPIQNNHQQRI TGEEYLAYLRSVVELFDLHIQSYEPVSDLIPDHEGFTLITRPHSGERRYRARRVVLAIGDMHYPHRLNIPGEDLPHVSHY FRDPHDYFRRRLLIVGGKNSAVEAALRCWRAGAQVTLAYRRSQLDAQRVKHWLLPDFLAQVEAGTIRFLARTTPVAIDSG GVVLAHTDEDGQPTTDHFYHPTDFVLLATGFRGDQRLLEQAGVVLQGPNRVPLYNPATMETNVPGLYLAGTVAAGIQQRY TLFIENSHEHAGKITQALTGRWPSRLGDVATRNYQLSFEQIAAN >Mature_364_residues MHYEELPLTAEHDVAIVGAGPIGLEVAVCLKQAGVDYIQFDAHQIGYTMTWWPRNTSFFSTTERLAIAGVPIQNNHQQRI TGEEYLAYLRSVVELFDLHIQSYEPVSDLIPDHEGFTLITRPHSGERRYRARRVVLAIGDMHYPHRLNIPGEDLPHVSHY FRDPHDYFRRRLLIVGGKNSAVEAALRCWRAGAQVTLAYRRSQLDAQRVKHWLLPDFLAQVEAGTIRFLARTTPVAIDSG GVVLAHTDEDGQPTTDHFYHPTDFVLLATGFRGDQRLLEQAGVVLQGPNRVPLYNPATMETNVPGLYLAGTVAAGIQQRY TLFIENSHEHAGKITQALTGRWPSRLGDVATRNYQLSFEQIAAN
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR001327 - InterPro: IPR000103 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: NA
Molecular weight: Translated: 40966; Mature: 40966
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHYEELPLTAEHDVAIVGAGPIGLEVAVCLKQAGVDYIQFDAHQIGYTMTWWPRNTSFFS CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECHHHHCEEEEEECCCCCCCC TTERLAIAGVPIQNNHQQRITGEEYLAYLRSVVELFDLHIQSYEPVSDLIPDHEGFTLIT CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEE RPHSGERRYRARRVVLAIGDMHYPHRLNIPGEDLPHVSHYFRDPHDYFRRRLLIVGGKNS CCCCCCHHHHHEEEEEEECCCCCCEECCCCCCCCCHHHHHHCCHHHHHHEEEEEEECCCH AVEAALRCWRAGAQVTLAYRRSQLDAQRVKHWLLPDFLAQVEAGTIRFLARTTPVAIDSG HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECC GVVLAHTDEDGQPTTDHFYHPTDFVLLATGFRGDQRLLEQAGVVLQGPNRVPLYNPATME CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCCCCCCCCCCCC TNVPGLYLAGTVAAGIQQRYTLFIENSHEHAGKITQALTGRWPSRLGDVATRNYQLSFEQ CCCCCEEEHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHH IAAN HCCC >Mature Secondary Structure MHYEELPLTAEHDVAIVGAGPIGLEVAVCLKQAGVDYIQFDAHQIGYTMTWWPRNTSFFS CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECHHHHCEEEEEECCCCCCCC TTERLAIAGVPIQNNHQQRITGEEYLAYLRSVVELFDLHIQSYEPVSDLIPDHEGFTLIT CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEE RPHSGERRYRARRVVLAIGDMHYPHRLNIPGEDLPHVSHYFRDPHDYFRRRLLIVGGKNS CCCCCCHHHHHEEEEEEECCCCCCEECCCCCCCCCHHHHHHCCHHHHHHEEEEEEECCCH AVEAALRCWRAGAQVTLAYRRSQLDAQRVKHWLLPDFLAQVEAGTIRFLARTTPVAIDSG HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECC GVVLAHTDEDGQPTTDHFYHPTDFVLLATGFRGDQRLLEQAGVVLQGPNRVPLYNPATME CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCCCCCCCCCCCC TNVPGLYLAGTVAAGIQQRYTLFIENSHEHAGKITQALTGRWPSRLGDVATRNYQLSFEQ CCCCCEEEHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHH IAAN HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]