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The map label for this gene is ybbN [C]

Identifier: 222523513

GI number: 222523513

Start: 262050

End: 262901

Strand: Reverse

Name: ybbN [C]

Synonym: Chy400_0219

Alternate gene names: 222523513

Gene position: 262901-262050 (Counterclockwise)

Preceding gene: 222523514

Following gene: 222523512

Centisome position: 4.99

GC content: 60.21

Gene sequence:

>852_bases
ATGATCACCGGAGTATCGAACAAAGCCAATCCAGCTACTGCCCAGGCTGTCGTCATTGATGTGACCGAGGCAACCTTTGA
GCGTGAGGTGCTCCAACGCTCACAGCAGACGCCGGTCGTCATCGATTTCTGGGCACCGTGGTGTGGTCCCTGCCGTGTAC
TTGGGCCGACGCTTGAACGGCTCGCACGCGAAGCAGGTGGGACGTGGGTGTTAGCAAAGATTAACGTGGATGAAAACCCA
CGATTGGCCCAGATGTTCCGGGTTCAGGGTATTCCCGCCGTCAAAGCGGTCTATCAGGGCAAAATCGTTGATGAGTTTAC
CGGTGCGTTGCCGGAGAGTCAGGTACGTACCTGGCTGAAGCGGATCGTGCCTGACCGTAATGCCGATCTGCTGGCGATGG
CACAGGCGCTCGAAGCAACCAATCCGGTTGAGGCGATTGCCCGTTATCGCCTGATCCTGGGGCAAGACCCAAATAACGAG
GCGGCGCTCTTCCATCTGGGGCGGCTGCTCGCTTTGCGCGGCGATCCCGAAGGCATTACGACGCTCAAGCAGGTTCCGGC
AGGTGGTCCCTTCGGTGGCCGGGCGATTGCCGGTCTGGCTATCGCCGATCTGGTCAATGCGCCGGCAGAGCCGGCAGATG
GTAGCGAAGGGCTGTACCGCCAGGCAGCGATTGCAGTGCGGAGTGGTGATTATGCCACCGCGATAGAGCATCTGTTAACA
CTGGTCGCTCGTGATCGAGCGTTCCGGGATGATGGTGCCCGCAAGGCACTGCTCGCCCTCTTTGCTCTGCTCGGTGACGA
CCATCCGCTGGTAGGCCCGGCCCGGCGGCGACTGGCGAATCTGTTGTTCTAA

Upstream 100 bases:

>100_bases
AAGATTGACACTCTTCTTACACTTTGTAGACACATCTTCAACAGCTTTCTGGTACACTACGTTACAGTGAAAACTATATC
GGTGCAAGGAGAAAACAGGC

Downstream 100 bases:

>100_bases
CGAACCCGATGATACCGGCGTGGTTGGATCACGCCGGTTTCCTTTTGTAGACTCCGCAGCGTACCTATGATAGTTGTACT
TTCCGGCGGCGTTGGTGCCG

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MITGVSNKANPATAQAVVIDVTEATFEREVLQRSQQTPVVIDFWAPWCGPCRVLGPTLERLAREAGGTWVLAKINVDENP
RLAQMFRVQGIPAVKAVYQGKIVDEFTGALPESQVRTWLKRIVPDRNADLLAMAQALEATNPVEAIARYRLILGQDPNNE
AALFHLGRLLALRGDPEGITTLKQVPAGGPFGGRAIAGLAIADLVNAPAEPADGSEGLYRQAAIAVRSGDYATAIEHLLT
LVARDRAFRDDGARKALLALFALLGDDHPLVGPARRRLANLLF

Sequences:

>Translated_283_residues
MITGVSNKANPATAQAVVIDVTEATFEREVLQRSQQTPVVIDFWAPWCGPCRVLGPTLERLAREAGGTWVLAKINVDENP
RLAQMFRVQGIPAVKAVYQGKIVDEFTGALPESQVRTWLKRIVPDRNADLLAMAQALEATNPVEAIARYRLILGQDPNNE
AALFHLGRLLALRGDPEGITTLKQVPAGGPFGGRAIAGLAIADLVNAPAEPADGSEGLYRQAAIAVRSGDYATAIEHLLT
LVARDRAFRDDGARKALLALFALLGDDHPLVGPARRRLANLLF
>Mature_283_residues
MITGVSNKANPATAQAVVIDVTEATFEREVLQRSQQTPVVIDFWAPWCGPCRVLGPTLERLAREAGGTWVLAKINVDENP
RLAQMFRVQGIPAVKAVYQGKIVDEFTGALPESQVRTWLKRIVPDRNADLLAMAQALEATNPVEAIARYRLILGQDPNNE
AALFHLGRLLALRGDPEGITTLKQVPAGGPFGGRAIAGLAIADLVNAPAEPADGSEGLYRQAAIAVRSGDYATAIEHLLT
LVARDRAFRDDGARKALLALFALLGDDHPLVGPARRRLANLLF

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=90, Percent_Identity=41.1111111111111, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI87081747, Length=283, Percent_Identity=27.9151943462898, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=34.3137254901961, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=36.5384615384615, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI212646193, Length=105, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28573567, Length=120, Percent_Identity=34.1666666666667, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639826, Length=97, Percent_Identity=32.9896907216495, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21358065, Length=94, Percent_Identity=35.1063829787234, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24664269, Length=106, Percent_Identity=32.0754716981132, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 30505; Mature: 30505

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGVSNKANPATAQAVVIDVTEATFEREVLQRSQQTPVVIDFWAPWCGPCRVLGPTLER
CCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
LAREAGGTWVLAKINVDENPRLAQMFRVQGIPAVKAVYQGKIVDEFTGALPESQVRTWLK
HHHHCCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
RIVPDRNADLLAMAQALEATNPVEAIARYRLILGQDPNNEAALFHLGRLLALRGDPEGIT
HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHH
TLKQVPAGGPFGGRAIAGLAIADLVNAPAEPADGSEGLYRQAAIAVRSGDYATAIEHLLT
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEECCCHHHHHHHHHH
LVARDRAFRDDGARKALLALFALLGDDHPLVGPARRRLANLLF
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MITGVSNKANPATAQAVVIDVTEATFEREVLQRSQQTPVVIDFWAPWCGPCRVLGPTLER
CCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
LAREAGGTWVLAKINVDENPRLAQMFRVQGIPAVKAVYQGKIVDEFTGALPESQVRTWLK
HHHHCCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
RIVPDRNADLLAMAQALEATNPVEAIARYRLILGQDPNNEAALFHLGRLLALRGDPEGIT
HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHH
TLKQVPAGGPFGGRAIAGLAIADLVNAPAEPADGSEGLYRQAAIAVRSGDYATAIEHLLT
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEECCCHHHHHHHHHH
LVARDRAFRDDGARKALLALFALLGDDHPLVGPARRRLANLLF
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]