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The map label for this gene is prdB [H]

Identifier: 222523354

GI number: 222523354

Start: 57977

End: 58786

Strand: Direct

Name: prdB [H]

Synonym: Chy400_0055

Alternate gene names: 222523354

Gene position: 57977-58786 (Clockwise)

Preceding gene: 222523353

Following gene: 222523355

Centisome position: 1.1

GC content: 62.59

Gene sequence:

>810_bases
TTGTACCGCCTGACCGGACAGATCTTCTCGCAGATACCGGCACTGGCCCGGCTATGGGGCAGCGCGTACCGGGCGCTCAA
CTTCGACGAAATTCCGTTCACACCATTCCGCAAACCCCTGCATGAGGCTCGACTGGCCCTGATCACGACCGGCGGGGTAC
ATCTGCGGGATCAGCCACCGTTCGACATGGCCGATCCCCGTGGCGACCCGACCTACCGCCGCATTCCGGCCACAACCCCG
CTGAGCGATCTGACCATCACCCACGACTACTACGATCACAGCGACGCCGAGCGCGATCTCAACATCCTCTTCCCGCTCGA
CCTGGTGCGCACACTGGTACAGCGCGGCATCATCGGCAGCCTCGCCGATTGCTACGGCTTCATGGGCCATATCGAACCAC
CCCACCTGACGACACTGCTGCAACAGACGGCACCGGAAGTAGCAACGTTCCTCAAACAAGAACAGGTTGACGCCGTACTC
CTCACCCCGGCTTGAGGGTTATGCAATCAGTCCGTGGGACTGATCGCACGCATCATCGAAGCAGCCGGCATCAGCACAGT
CTGCATCGTCAGCCTGAAACCGATTGCCGAACAGGTACGACCGCCGCGCACCCTGCACCTGGCCTGGCCATTCGGCCATC
CGCTGGGTGAACCGGGCAACCGCGCCCAACAGCTCTCTGTCCTCCACGCCGCACTCCAGGCCCTGGCAACCGCCGAACCG
GGAGCCATCATCGAACCGGGCTGGCGCTGGCGACGGGAAATCTACACACCACCACCTGACTGGCTGGGTGAGGGGAAAGA
GAGGCTATAA

Upstream 100 bases:

>100_bases
CGACAGGCCCGTCTCATCTACCGCCCATACGACTGGCGATTGAACCTGGCCTGAAGGAGCGGCTATGACCGACGACTGGC
GCAAGCAGTCACTCAAAGAA

Downstream 100 bases:

>100_bases
ATCATCACACCTGCATTGTGTCCAACAAAAACGTATGTTATCCTGAAACCACATACAACAACTCGGTGGCAAGGTACACA
TCGAATGGTAAACAAAGATC

Product: D-proline reductase (dithiol)

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MYRLTGQIFSQIPALARLWGSAYRALNFDEIPFTPFRKPLHEARLALITTGGVHLRDQPPFDMADPRGDPTYRRIPATTP
LSDLTITHDYYDHSDAERDLNILFPLDLVRTLVQRGIIGSLADCYGFMGHIEPPHLTTLLQQTAPEVATFLKQEQVDAVL
LTPAUGLCNQSVGLIARIIEAAGISTVCIVSLKPIAEQVRPPRTLHLAWPFGHPLGEPGNRAQQLSVLHAALQALATAEP
GAIIEPGWRWRREIYTPPPDWLGEGKERL

Sequences:

>Translated_269_residues
MYRLTGQIFSQIPALARLWGSAYRALNFDEIPFTPFRKPLHEARLALITTGGVHLRDQPPFDMADPRGDPTYRRIPATTP
LSDLTITHDYYDHSDAERDLNILFPLDLVRTLVQRGIIGSLADCYGFMGHIEPPHLTTLLQQTAPEVATFLKQEQVDAVL
LTPA*GLCNQSVGLIARIIEAAGISTVCIVSLKPIAEQVRPPRTLHLAWPFGHPLGEPGNRAQQLSVLHAALQALATAEP
GAIIEPGWRWRREIYTPPPDWLGEGKERL
>Mature_269_residues
MYRLTGQIFSQIPALARLWGSAYRALNFDEIPFTPFRKPLHEARLALITTGGVHLRDQPPFDMADPRGDPTYRRIPATTP
LSDLTITHDYYDHSDAERDLNILFPLDLVRTLVQRGIIGSLADCYGFMGHIEPPHLTTLLQQTAPEVATFLKQEQVDAVL
LTPA*GLCNQSVGLIARIIEAAGISTVCIVSLKPIAEQVRPPRTLHLAWPFGHPLGEPGNRAQQLSVLHAALQALATAEP
GAIIEPGWRWRREIYTPPPDWLGEGKERL

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 29763; Mature: 29763

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRLTGQIFSQIPALARLWGSAYRALNFDEIPFTPFRKPLHEARLALITTGGVHLRDQPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEECCEEECCCCC
FDMADPRGDPTYRRIPATTPLSDLTITHDYYDHSDAERDLNILFPLDLVRTLVQRGIIGS
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHH
LADCYGFMGHIEPPHLTTLLQQTAPEVATFLKQEQVDAVLLTPAGLCNQSVGLIARIIEA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHCCHHHHHHHHHHHH
AGISTVCIVSLKPIAEQVRPPRTLHLAWPFGHPLGEPGNRAQQLSVLHAALQALATAEPG
CCCCEEEEEECHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
AIIEPGWRWRREIYTPPPDWLGEGKERL
CEECCCHHHHHCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MYRLTGQIFSQIPALARLWGSAYRALNFDEIPFTPFRKPLHEARLALITTGGVHLRDQPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEECCEEECCCCC
FDMADPRGDPTYRRIPATTPLSDLTITHDYYDHSDAERDLNILFPLDLVRTLVQRGIIGS
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHH
LADCYGFMGHIEPPHLTTLLQQTAPEVATFLKQEQVDAVLLTPAGLCNQSVGLIARIIEA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHCCHHHHHHHHHHHH
AGISTVCIVSLKPIAEQVRPPRTLHLAWPFGHPLGEPGNRAQQLSVLHAALQALATAEPG
CCCCEEEEEECHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
AIIEPGWRWRREIYTPPPDWLGEGKERL
CEECCCHHHHHCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]