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The map label for this gene is rhiR [H]

Identifier: 222109223

GI number: 222109223

Start: 128401

End: 129123

Strand: Direct

Name: rhiR [H]

Synonym: Avi_9665

Alternate gene names: 222109223

Gene position: 128401-129123 (Clockwise)

Preceding gene: 222109211

Following gene: 222109224

Centisome position: 98.44

GC content: 52.56

Gene sequence:

>723_bases
GTGAAAAATCATGACATTTATGAATTTATGGAACGCTGCGACAATCAAAAGAGCGTCGATAATCTGTTTTCGGATTTTGG
AACGGTCATCGCGAAACGCGGCTTTCATTCTTACATTTACACCGGGCTGCCAGCGGTGGGTGACGACGTCAAGCATTATG
TCGTCAAAAATGCGTGGCCGCCGGGATGGACCGAGCAATTCGAGGGTCTTAACTATTTCGCCGATGATCCCGTCAGTCGG
TGGTCTCTTTCCCAGTCGAAACCCTTTACCTGGAAAACCGCAAGAGAAGAGACGAAGGCGACGGCGCGCACCAAAGAGAT
CCAGCAGGAAGCGGACAGGTATCGCTTGTGCGATGGCATCGTTTTCCCGATGTTCGACCCAAATTCCTGGCAGTCGGTGA
TCTCACTCGCAACTGACGACAAGGGTGGATTGGCAAAAGAGAACATTGGCGACCTTTATCTTCTCTCCTCTTATTGTGCG
ATGACGGCAAACAACCTGCTTCGACGCGCCGAACAAGCGGATCATCGGTTAACAGACCGGGAGAAAGAAATTCTGCAGTG
GGTTTCACGCGGGAAGACGGATTGGGAGATCGGGACGATCCTGCGAATGACCGAGGGCTCCGTTACACAGCGACTGGCCC
GCATCCGAGACACCCTTGGTGTCAAAAATAGACCGCAGACCGTTTCACAGGCGATTCGGCTCGGCCTGATCAATTCGGTC
TAG

Upstream 100 bases:

>100_bases
GAGCATCTCGAAAAGTTGATGCACGTTCGAAGCTTTTAATGGCGCAGATTTGAGGTAAGAATGGCACGGGGAGCTGTGCG
ATGTAGGAAGGGAATTTGCG

Downstream 100 bases:

>100_bases
CTTGTCAAGATAAGGAACCTGAACTTTCGCGAATCGTGGAGGCATCTAAAGTTGCGTCATCTTTCAAGAGGACGCGCAGA
TGTTGGTTCATGTCATTACT

Product: two-component transcriptional regulator LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKNHDIYEFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFADDPVSR
WSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVISLATDDKGGLAKENIGDLYLLSSYCA
MTANNLLRRAEQADHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLINSV

Sequences:

>Translated_240_residues
MKNHDIYEFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFADDPVSR
WSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVISLATDDKGGLAKENIGDLYLLSSYCA
MTANNLLRRAEQADHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLINSV
>Mature_240_residues
MKNHDIYEFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFADDPVSR
WSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVISLATDDKGGLAKENIGDLYLLSSYCA
MTANNLLRRAEQADHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLINSV

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27506; Mature: 27506

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]