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The map label for this gene is trbJ [H]

Identifier: 222109218

GI number: 222109218

Start: 122804

End: 123592

Strand: Reverse

Name: trbJ [H]

Synonym: Avi_9655

Alternate gene names: 222109218

Gene position: 123592-122804 (Counterclockwise)

Preceding gene: 222109219

Following gene: 222109217

Centisome position: 94.75

GC content: 60.71

Gene sequence:

>789_bases
ATGCTGCGTCGCTCTTTGCTTCGTAATGCCCTTGCCGGTTTGGTCCTCGCCGTCAGCCCAAGCGTCGTCTTCGCCGGCGC
TGCAACGGGTGGGGCGACGGAATGGACCCAGCTTCTCAACAATGCCCAGCTTCTCGAACAGTCGGGGCAGGGGGTCGAAC
AGATCGCCAATCAGACACAGCAGATCGCCCACCAGGTCACGCAGATCCAGAACCAGCTCGACCAGTACCGGACGATGCTG
CAGAACCTCGAAAAGCTGCCTGACACCATCTGGGGCCAGGCTCAGAAGGACCTCAATCGGCTTCGTCAACTGACCCAGCA
GGGGGAGGGCATCGGCTTCTCGATGGCCAATCTCGACGACGTCCTGAAACAGCGCTTTCCGAGTTTCGAGCAGTTCGCCT
CTGGGGTCCAGGGCGGACAGAACTTCTCTCAGCAATATGGGCAGTGGTCAAAGACCAACCGTGACACGATCGGCGGCACA
CTCGCTCAAGCCGGGATGACGGCGCAGCAGTTCGACACCGAACAAAGCACCATGAAGCAGTTGCAGGAGCAGTCGCAAAC
GTCCGTCGGCCAGATGCAGGCGCTACAGGTCGGCCACTCGATTGCCAGCCAGCAGGTCGAACAGATGCAGAAGTTGCGCG
GCCTGATCGCCCAGCAATCGACGATGATGGGCACATGGTATCAGTCCGAGCAGACCGCCAAGGATCTCGCCCAGCATAAG
CGGGAAAGCTTCTTCTCGAGTACCCCGCCGTCGACGTCGGGCGGCCAGAAAATGCAGCCGCGGTGGTAG

Upstream 100 bases:

>100_bases
GGCGTCTCCGGCAAGCACGATCTCCAGCGGATCAGCGAACTTTACGACCACCACGGGGATGAGTGGCCGCGCCACTGGCT
TCAATCAAGAGGAATCGAAA

Downstream 100 bases:

>100_bases
TCGTATGGCACAGGTGAAACTTCCCATCGTCATCCTTGTCGCCCTTTTCTCCGCCGTGGCCGGCGGCGCGATTTCCTATG
TCGCGATCCCCACTGCCGAT

Product: conjugal transfer protein TrbJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLRRSLLRNALAGLVLAVSPSVVFAGAATGGATEWTQLLNNAQLLEQSGQGVEQIANQTQQIAHQVTQIQNQLDQYRTML
QNLEKLPDTIWGQAQKDLNRLRQLTQQGEGIGFSMANLDDVLKQRFPSFEQFASGVQGGQNFSQQYGQWSKTNRDTIGGT
LAQAGMTAQQFDTEQSTMKQLQEQSQTSVGQMQALQVGHSIASQQVEQMQKLRGLIAQQSTMMGTWYQSEQTAKDLAQHK
RESFFSSTPPSTSGGQKMQPRW

Sequences:

>Translated_262_residues
MLRRSLLRNALAGLVLAVSPSVVFAGAATGGATEWTQLLNNAQLLEQSGQGVEQIANQTQQIAHQVTQIQNQLDQYRTML
QNLEKLPDTIWGQAQKDLNRLRQLTQQGEGIGFSMANLDDVLKQRFPSFEQFASGVQGGQNFSQQYGQWSKTNRDTIGGT
LAQAGMTAQQFDTEQSTMKQLQEQSQTSVGQMQALQVGHSIASQQVEQMQKLRGLIAQQSTMMGTWYQSEQTAKDLAQHK
RESFFSSTPPSTSGGQKMQPRW
>Mature_262_residues
MLRRSLLRNALAGLVLAVSPSVVFAGAATGGATEWTQLLNNAQLLEQSGQGVEQIANQTQQIAHQVTQIQNQLDQYRTML
QNLEKLPDTIWGQAQKDLNRLRQLTQQGEGIGFSMANLDDVLKQRFPSFEQFASGVQGGQNFSQQYGQWSKTNRDTIGGT
LAQAGMTAQQFDTEQSTMKQLQEQSQTSVGQMQALQVGHSIASQQVEQMQKLRGLIAQQSTMMGTWYQSEQTAKDLAQHK
RESFFSSTPPSTSGGQKMQPRW

Specific function: Unknown

COG id: COG5314

COG function: function code U; Conjugal transfer/entry exclusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014147 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29054; Mature: 29054

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]