Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
---|---|
Accession | NC_011991 |
Length | 130,435 |
Click here to switch to the map view.
The map label for this gene is cysD [H]
Identifier: 222109203
GI number: 222109203
Start: 91069
End: 91971
Strand: Reverse
Name: cysD [H]
Synonym: Avi_9630
Alternate gene names: 222109203
Gene position: 91971-91069 (Counterclockwise)
Preceding gene: 222109204
Following gene: 222109202
Centisome position: 70.51
GC content: 51.72
Gene sequence:
>903_bases GTGTCTCAACCCCACCATCTTGATTATCTCGAAGCAGAAGCCATTAACATTTTCCGTGAGGTTATAGCTACATTCGAGCG CCCGGTAATCCTTTACTCCGTCGGAAAAGATTCCTCGGTACTTCTTCATATTGCCCAGAAAGCCGTCCACCCGGCGCGGC TGGAAGTCCCCCTACTTCATATCGATACGACGTGGAAATTTAAGGAAATGATCGCCTTTCGTGACGAGACAGCAGTCACG AACGGGCTGAAGCTTATCGTTCACACCAATCACGAAGCCGTCCGCGACAACATAAATCCGTTCGAACACACCCTCGACAC CTACACCCATCAGATGAAAACAATAGCACTGCGCCAGGCCCTTGAGGCAGGTGGTTTCGATGCCGCAGTAGGAGGCGCGC GGCGTGACGAGGAAAAATCCCGTGCGAAAGAAAGAATTTTCTCTCTTCGTTCATTTAACCATTCATGGGACCCGAAAAAT CAGCGTCCGGAAATGTGGAACATATTCAACACCAATCTCTCGCAGGGCCAAACCATGCGAGTATTTCCCCTTTCCAATTG GACCGAATTGGACATCTGGGAATACATCTCATGCAAGAACATCCCGATAGTATCACTGTATACCTCTGCACAGCGGCCGG TGGTGCGCAGAGGGCGACAGTGGATCGTCGTCGATGACGAGCGCTTTATCCTGCAGTCTGGCGAGACGCCTGAGTACAGG AACGTTCGGTTCCGCACGCTGGGCTGTTATCCCCTTACTGCCGCCGTCGAATCAAACGCGTCCTCGGTCAAAAAAATCAT TAGGGAAATGAAAACGACTAGAATGTCGGAGCGTCAGGGTCGCATCGCTGACAGCGACCCAGCGAGCTCAATGGAGAGGA AAAAACGGGAGGGGTATTTCTGA
Upstream 100 bases:
>100_bases GGTATGGCAGTAGCAAAAAGCTAAGCGAAAACCTACACCAACCCTAAATGTGAAACGCCGAGAACGCTGCTCTTTTGAGT GGTGTGCGGGGAGTATACAC
Downstream 100 bases:
>100_bases TGCGGCAAGAAATCCGCACTCGGCTGGAAAGGTCTCACGCTCAACAAGTCCAAAAGTCCTTGCTGAGATTCATGACCTGC GGCTCAGTGGATGATGGCAA
Product: sulfate adenylyltransferase subunit 2
Products: NA
Alternate protein names: ATP-sulfurylase small subunit; Sulfate adenylate transferase; SAT [H]
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSQPHHLDYLEAEAINIFREVIATFERPVILYSVGKDSSVLLHIAQKAVHPARLEVPLLHIDTTWKFKEMIAFRDETAVT NGLKLIVHTNHEAVRDNINPFEHTLDTYTHQMKTIALRQALEAGGFDAAVGGARRDEEKSRAKERIFSLRSFNHSWDPKN QRPEMWNIFNTNLSQGQTMRVFPLSNWTELDIWEYISCKNIPIVSLYTSAQRPVVRRGRQWIVVDDERFILQSGETPEYR NVRFRTLGCYPLTAAVESNASSVKKIIREMKTTRMSERQGRIADSDPASSMERKKREGYF
Sequences:
>Translated_300_residues MSQPHHLDYLEAEAINIFREVIATFERPVILYSVGKDSSVLLHIAQKAVHPARLEVPLLHIDTTWKFKEMIAFRDETAVT NGLKLIVHTNHEAVRDNINPFEHTLDTYTHQMKTIALRQALEAGGFDAAVGGARRDEEKSRAKERIFSLRSFNHSWDPKN QRPEMWNIFNTNLSQGQTMRVFPLSNWTELDIWEYISCKNIPIVSLYTSAQRPVVRRGRQWIVVDDERFILQSGETPEYR NVRFRTLGCYPLTAAVESNASSVKKIIREMKTTRMSERQGRIADSDPASSMERKKREGYF >Mature_299_residues SQPHHLDYLEAEAINIFREVIATFERPVILYSVGKDSSVLLHIAQKAVHPARLEVPLLHIDTTWKFKEMIAFRDETAVTN GLKLIVHTNHEAVRDNINPFEHTLDTYTHQMKTIALRQALEAGGFDAAVGGARRDEEKSRAKERIFSLRSFNHSWDPKNQ RPEMWNIFNTNLSQGQTMRVFPLSNWTELDIWEYISCKNIPIVSLYTSAQRPVVRRGRQWIVVDDERFILQSGETPEYRN VRFRTLGCYPLTAAVESNASSVKKIIREMKTTRMSERQGRIADSDPASSMERKKREGYF
Specific function: First step in the sulfate activation pathway. This reaction occurs early in the reductive branch of the cysteine biosynthetic pathway. [C]
COG id: COG0175
COG function: function code EH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAPS reductase family. CysD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789109, Length=295, Percent_Identity=59.6610169491525, Blast_Score=363, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002500 - InterPro: IPR014729 - InterPro: IPR011784 [H]
Pfam domain/function: PF01507 PAPS_reduct [H]
EC number: =2.7.7.4 [H]
Molecular weight: Translated: 34735; Mature: 34604
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPHHLDYLEAEAINIFREVIATFERPVILYSVGKDSSVLLHIAQKAVHPARLEVPLLH CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE IDTTWKFKEMIAFRDETAVTNGLKLIVHTNHEAVRDNINPFEHTLDTYTHQMKTIALRQA ECCCHHHHHHHHHCCCHHHCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LEAGGFDAAVGGARRDEEKSRAKERIFSLRSFNHSWDPKNQRPEMWNIFNTNLSQGQTMR HHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCEEE VFPLSNWTELDIWEYISCKNIPIVSLYTSAQRPVVRRGRQWIVVDDERFILQSGETPEYR EEECCCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCEEEEECCCCCCCC NVRFRTLGCYPLTAAVESNASSVKKIIREMKTTRMSERQGRIADSDPASSMERKKREGYF CEEEEEECCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure SQPHHLDYLEAEAINIFREVIATFERPVILYSVGKDSSVLLHIAQKAVHPARLEVPLLH CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE IDTTWKFKEMIAFRDETAVTNGLKLIVHTNHEAVRDNINPFEHTLDTYTHQMKTIALRQA ECCCHHHHHHHHHCCCHHHCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LEAGGFDAAVGGARRDEEKSRAKERIFSLRSFNHSWDPKNQRPEMWNIFNTNLSQGQTMR HHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCEEE VFPLSNWTELDIWEYISCKNIPIVSLYTSAQRPVVRRGRQWIVVDDERFILQSGETPEYR EEECCCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCEEEEECCCCCCCC NVRFRTLGCYPLTAAVESNASSVKKIIREMKTTRMSERQGRIADSDPASSMERKKREGYF CEEEEEECCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]