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The map label for this gene is 222109196

Identifier: 222109196

GI number: 222109196

Start: 83757

End: 84449

Strand: Reverse

Name: 222109196

Synonym: Avi_9617

Alternate gene names: NA

Gene position: 84449-83757 (Counterclockwise)

Preceding gene: 222109201

Following gene: 222109195

Centisome position: 64.74

GC content: 59.31

Gene sequence:

>693_bases
TTGTTTAAGAACCGCTTGCGCAGGTTGATCCACAGGTCACGCGCGGGCGATCTCCGGGCGCAACTGCTCGTGTCAGTACC
GGAGCAATACTCCCCAATGTGCCGTTTGAATCTTCCCCAGGTGCTGCGGCCGCTGGTCTTCCGGGGCGCGCCCCGGAAGA
CCAGCGGCGCGTCATTGCCGATACTCCTTCCGATGGCCGGAAGGGGGACATTGGTGATCAAGCTGAGGGAGACGATCATG
ATCCTGGATCTGCATCAGCAGGGGCTGACAGTGTCAGCTATCTCCAGAGAAACAGGCATCGATCGCAAGACGGTGCGCAA
ATACATAGAGCGGGGCCTCGAGGTCCCGGCTTATGGACCGAGAAAGCCTCGCGCGACGTTTATCGATCCGTTCGCTTCAT
ATCTGCGGGAGCGGGTGAAGACCTATCCCGGCCTCACTGGTAGTCGATTGCTCCGAGAACTCCGGGATCGAGGTTATGCC
GGTGGTTACACCGCCGTCACGGACTTTCTTCGTGACGTGCGACCTCCGGCAAATCCAGGTTTCGAAGTTCGCTTCGAGAC
GCCGCCAGGCGAACAGGCCCAAGTCGATTTCGCCCAGTTCCATGTCGTTTTCACCGACGAGCCAATGACGCCAAGGATCG
TTCGGTTGTTCTCGATGGTGTTGGGTCACAGCCGCCTCATCTGGGCTCGCTGA

Upstream 100 bases:

>100_bases
GTGCGTTCGGTAGCGCTGACCCCTTGGCGACCATCCGGTGCGTTTGGTGAGTTTGGTATTGGTTGATGTCTCGTCGATAA
AGATCAGTCGAGCCAAGGAG

Downstream 100 bases:

>100_bases
TCGCCGCGCACCCTCGAGGGCCGCAAACAACGCCGGGTTCATCCTGACCACCGACGAGCACTCACGCCGCAACACTGGCC
ACGAACACGAGGCGAGGCCA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MFKNRLRRLIHRSRAGDLRAQLLVSVPEQYSPMCRLNLPQVLRPLVFRGAPRKTSGASLPILLPMAGRGTLVIKLRETIM
ILDLHQQGLTVSAISRETGIDRKTVRKYIERGLEVPAYGPRKPRATFIDPFASYLRERVKTYPGLTGSRLLRELRDRGYA
GGYTAVTDFLRDVRPPANPGFEVRFETPPGEQAQVDFAQFHVVFTDEPMTPRIVRLFSMVLGHSRLIWAR

Sequences:

>Translated_230_residues
MFKNRLRRLIHRSRAGDLRAQLLVSVPEQYSPMCRLNLPQVLRPLVFRGAPRKTSGASLPILLPMAGRGTLVIKLRETIM
ILDLHQQGLTVSAISRETGIDRKTVRKYIERGLEVPAYGPRKPRATFIDPFASYLRERVKTYPGLTGSRLLRELRDRGYA
GGYTAVTDFLRDVRPPANPGFEVRFETPPGEQAQVDFAQFHVVFTDEPMTPRIVRLFSMVLGHSRLIWAR
>Mature_230_residues
MFKNRLRRLIHRSRAGDLRAQLLVSVPEQYSPMCRLNLPQVLRPLVFRGAPRKTSGASLPILLPMAGRGTLVIKLRETIM
ILDLHQQGLTVSAISRETGIDRKTVRKYIERGLEVPAYGPRKPRATFIDPFASYLRERVKTYPGLTGSRLLRELRDRGYA
GGYTAVTDFLRDVRPPANPGFEVRFETPPGEQAQVDFAQFHVVFTDEPMTPRIVRLFSMVLGHSRLIWAR

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26207; Mature: 26207

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNRLRRLIHRSRAGDLRAQLLVSVPEQYSPMCRLNLPQVLRPLVFRGAPRKTSGASLP
CCHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
ILLPMAGRGTLVIKLRETIMILDLHQQGLTVSAISRETGIDRKTVRKYIERGLEVPAYGP
EEEEECCCCEEEEEEECEEEEEEECCCCCEEEEHHHHHCCCHHHHHHHHHCCCCCCCCCC
RKPRATFIDPFASYLRERVKTYPGLTGSRLLRELRDRGYAGGYTAVTDFLRDVRPPANPG
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
FEVRFETPPGEQAQVDFAQFHVVFTDEPMTPRIVRLFSMVLGHSRLIWAR
EEEEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MFKNRLRRLIHRSRAGDLRAQLLVSVPEQYSPMCRLNLPQVLRPLVFRGAPRKTSGASLP
CCHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
ILLPMAGRGTLVIKLRETIMILDLHQQGLTVSAISRETGIDRKTVRKYIERGLEVPAYGP
EEEEECCCCEEEEEEECEEEEEEECCCCCEEEEHHHHHCCCHHHHHHHHHCCCCCCCCCC
RKPRATFIDPFASYLRERVKTYPGLTGSRLLRELRDRGYAGGYTAVTDFLRDVRPPANPG
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
FEVRFETPPGEQAQVDFAQFHVVFTDEPMTPRIVRLFSMVLGHSRLIWAR
EEEEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]