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The map label for this gene is rbn [C]

Identifier: 22127672

GI number: 22127672

Start: 4219994

End: 4220938

Strand: Reverse

Name: rbn [C]

Synonym: y3801

Alternate gene names: 22127672

Gene position: 4220938-4219994 (Counterclockwise)

Preceding gene: 22127673

Following gene: 22127671

Centisome position: 91.74

GC content: 48.36

Gene sequence:

>945_bases
GTGCTAACCCTTATCACGCTGGCCCACCCCGAGCTTTATCGTGTTGACAGAGAGACGAATATGGCAAGTTTCCGGCGTTT
TCGCTTACTTTCCCCCTTAAAACCCTGTGTCACTTTTGGGCGGATGCTGTACACCCGAATTGATAAAGATGGTCTGACGA
TGCTGGCCGGGCATTTGGCCTATGTTTCGTTGCTCTCTTTGGTCCCCTTGATTACGGTGATTTTTGCGTTATTCGCTGCT
TTCCCGATGTTTGCTGAGATCAGCATAAAGTTAAAAGCCTTTATATTTGCTAACTTTATGCCTGCCACGGGTGACATCAT
CCAAAATTATCTTGAGCAGTTTGTCGCCAACTCCAATCGTATGACCGTGGTAGGCACCTGTGGTCTGATCGTCACCGCGT
TATTACTGATTTACTCCGTCGATAGTGTGCTCAATATTATTTGGCGCAGTAAAATTCAGCGCTCACTGGTCTTTTCATTT
GCAGTTTATTGGATGGTATTGACGCTGGGGCCGATCCTGGTGGGGGCCAGCATGGTTATCAGTTCGTATTTACTGTCACT
ACACTGGCTGGCACACGCCAGGGTAGATAGCATGATCGATGAGATATTACGGGTATTTCCGTTATTGATCTCCTGGGTTT
CTTTTTGGCTATTGTATAGCGTGGTGCCCACGGTACGGGTGCCTGCTCGAGATGCGCTTATCGGCGCACTGGTAGCTGCA
TTACTCTTTGAGTTGGGTAAGAAAGGGTTCGCGATGTATATCACGCTGTTTCCCTCTTATCAGTTGATTTATGGGGTATT
AGCGGTCATTCCCATTTTATTCCTCTGGGTGTACTGGAGTTGGTGCATTGTGTTATTAGGTGCGGAAATCACCGTGACAT
TGGGTGAATACCGCGCCGAGCGCCATCACGCGAAGAGCGTCACCACCCAGAGTCCGGAGATGTAA

Upstream 100 bases:

>100_bases
TGTTGGTATAAATGCTATTCACGTCACCGATAGACAAATTATTCCTACTTATTTTTCCTTATAATTTCGTGCTCTAATCA
TTAATGGGTTAGCCTTAGTC

Downstream 100 bases:

>100_bases
GGCATTATGATTGCGTTGATTCAACGGGCGCTTAGCGCCAGTGTCGTGGTCGAAGGGAATATCGTGGGTGAAATTGGCCC
TGGCCTACTGGTATTACTCG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLTLITLAHPELYRVDRETNMASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSF
AVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAA
LLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVTTQSPEM

Sequences:

>Translated_314_residues
MLTLITLAHPELYRVDRETNMASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSF
AVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAA
LLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVTTQSPEM
>Mature_314_residues
MLTLITLAHPELYRVDRETNMASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLAYVSLLSLVPLITVIFALFAA
FPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNRMTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSF
AVYWMVLTLGPILVGASMVISSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAA
LLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAERHHAKSVTTQSPEM

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=279, Percent_Identity=69.8924731182796, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 35458; Mature: 35458

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLITLAHPELYRVDRETNMASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLA
CEEEEEECCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
MTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAE
HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHH
RHHAKSVTTQSPEM
HHHHHHCCCCCCCC
>Mature Secondary Structure
MLTLITLAHPELYRVDRETNMASFRRFRLLSPLKPCVTFGRMLYTRIDKDGLTMLAGHLA
CEEEEEECCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YVSLLSLVPLITVIFALFAAFPMFAEISIKLKAFIFANFMPATGDIIQNYLEQFVANSNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
MTVVGTCGLIVTALLLIYSVDSVLNIIWRSKIQRSLVFSFAVYWMVLTLGPILVGASMVI
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSYLLSLHWLAHARVDSMIDEILRVFPLLISWVSFWLLYSVVPTVRVPARDALIGALVAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLFELGKKGFAMYITLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTLGEYRAE
HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHH
RHHAKSVTTQSPEM
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA