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The map label for this gene is lsrR [H]

Identifier: 22127637

GI number: 22127637

Start: 4188851

End: 4189000

Strand: Reverse

Name: lsrR [H]

Synonym: y3766

Alternate gene names: 22127637

Gene position: 4189000-4188851 (Counterclockwise)

Preceding gene: 22127639

Following gene: 22127636

Centisome position: 91.05

GC content: 48.67

Gene sequence:

>150_bases
ATGAGTGAAGAGGAACTGCTCGCTCGCGTTGCGTGGTTTTATTATCACGATGGTTTAACACAAGGGGATATTGGTGAGTT
GCTGGGGCTGGCTCGGCTTAAAGTCTCTCGATTATTGGAGAAAGGCCGGCAGTCTGGGGTGATAGATTAA

Upstream 100 bases:

>100_bases
AGCGGCAATAAGAGAACAATCGGCAATGATAAAAGAAAAACCAGCAGTAAAAGAAAAACCCCTGTCGTCCAACGACGAAT
ACAAATATCCGGGTAATAGC

Downstream 100 bases:

>100_bases
TTCGCGCTATGAAGGCTGTCTGGAACTGGAAAATACCCTGCAACAGCATTTTGGCCTGAAGCATATCCGCATTCTGCCGT
CTTTGGCCTCCCTCAGTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 49; Mature: 48

Protein sequence:

>49_residues
MSEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVID

Sequences:

>Translated_49_residues
MSEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVID
>Mature_48_residues
SEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVID

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=48, Percent_Identity=75, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 5534; Mature: 5403

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVID
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVID
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]