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The map label for this gene is yjjV [H]

Identifier: 22127616

GI number: 22127616

Start: 4165697

End: 4166509

Strand: Reverse

Name: yjjV [H]

Synonym: y3745

Alternate gene names: 22127616

Gene position: 4166509-4165697 (Counterclockwise)

Preceding gene: 22127617

Following gene: 22127615

Centisome position: 90.56

GC content: 52.89

Gene sequence:

>813_bases
GTGATGAGAACGCCAGATAAGCCGATGCCGTATTTTATCGATACCCACTGTCATTTTGACTTCCCTCCGTTCACCGGTGA
TGAAGCCGCGAGTTTAGCCTGTGCGGCAGAGGCGAATGTCAGGCAATTGATCGTTCCTTCAGTCAAGGCCGCATATTTCT
CCCGTATTTTGGCATTAGCCGATCGTTATCCCCCCTTGTTTGCGGCTCTTGGCTTACACCCCCTGTATATTGCCGAACAT
GAGGATGCCGATCTGGCGGCACTGGCATCGCATCTGGCAGATAAGCCACCGAAATTGGTCGCAATAGGGGAGATTGGCCT
CGATCTGTATATGGATGAACCGCAGTTTCCACATCAGTTAGTGATCCTGAATATGCAGCTTGAACTGGCCAAACAGCATG
ATTTGCCGGTTATTTTGCATTCACGTCGCTCACACGATCCACTGGCTGCAGCATTGCGTAAAGCCGCGTTGCCGCGCGCG
GGTGTGATACATGGTTTTGCGGGCAGCTTAGCGCAGGCGCAAGCCTTTATTCGCCTGGGTTATTACATTGGTGTGGGGGG
GACCATCACTTATAAGCGAGCGCAGAAAACCCGTCATGTTATGGCCTCATTGCCGCTCTCCTCGTTGCTCTTAGAAACCG
ATGCACCCGATATGCCTCTGGCGAGTTTTCAAGGGCAAGCCAATCGCCCTGAACGAGCCGCCAATGTGTTTGCCGCCTTG
TGTGAGTTGCGCCCAGAGCCAGCCGATGAGATTGCGGCTGAGTTGATGTGTAATAGCCAGCGTTTATTTTCCCTTCCTCC
CCTTCGTCCTTGA

Upstream 100 bases:

>100_bases
CTCACTGACTGTCGTTGATACTGAACAAGCGGAGGCTAACTCTTTACCCGTCGATATCACTTTGCCACCGAATCTGACAA
AAAAATAAAGGTAATACTGT

Downstream 100 bases:

>100_bases
CGCTGCAGCGGTGTTAGCTTCTCTCACTCACCCGAATCACTTACTTGAGTAAGCTCATCGGGATTTGTTCGCTTGCTGCC
TTGCTGCAACGACAATGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MMRTPDKPMPYFIDTHCHFDFPPFTGDEAASLACAAEANVRQLIVPSVKAAYFSRILALADRYPPLFAALGLHPLYIAEH
EDADLAALASHLADKPPKLVAIGEIGLDLYMDEPQFPHQLVILNMQLELAKQHDLPVILHSRRSHDPLAAALRKAALPRA
GVIHGFAGSLAQAQAFIRLGYYIGVGGTITYKRAQKTRHVMASLPLSSLLLETDAPDMPLASFQGQANRPERAANVFAAL
CELRPEPADEIAAELMCNSQRLFSLPPLRP

Sequences:

>Translated_270_residues
MMRTPDKPMPYFIDTHCHFDFPPFTGDEAASLACAAEANVRQLIVPSVKAAYFSRILALADRYPPLFAALGLHPLYIAEH
EDADLAALASHLADKPPKLVAIGEIGLDLYMDEPQFPHQLVILNMQLELAKQHDLPVILHSRRSHDPLAAALRKAALPRA
GVIHGFAGSLAQAQAFIRLGYYIGVGGTITYKRAQKTRHVMASLPLSSLLLETDAPDMPLASFQGQANRPERAANVFAAL
CELRPEPADEIAAELMCNSQRLFSLPPLRP
>Mature_270_residues
MMRTPDKPMPYFIDTHCHFDFPPFTGDEAASLACAAEANVRQLIVPSVKAAYFSRILALADRYPPLFAALGLHPLYIAEH
EDADLAALASHLADKPPKLVAIGEIGLDLYMDEPQFPHQLVILNMQLELAKQHDLPVILHSRRSHDPLAAALRKAALPRA
GVIHGFAGSLAQAQAFIRLGYYIGVGGTITYKRAQKTRHVMASLPLSSLLLETDAPDMPLASFQGQANRPERAANVFAAL
CELRPEPADEIAAELMCNSQRLFSLPPLRP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=229, Percent_Identity=31.4410480349345, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI110349730, Length=272, Percent_Identity=28.6764705882353, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI110349734, Length=272, Percent_Identity=29.0441176470588, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=174, Percent_Identity=35.632183908046, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=28.158844765343, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=224, Percent_Identity=30.3571428571429, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=28.1853281853282, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI225903424, Length=277, Percent_Identity=26.7148014440433, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=64.3137254901961, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI1787342, Length=265, Percent_Identity=28.3018867924528, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI48994985, Length=251, Percent_Identity=28.6852589641434, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=213, Percent_Identity=27.6995305164319, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=22.1374045801527, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29557; Mature: 29557

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTPDKPMPYFIDTHCHFDFPPFTGDEAASLACAAEANVRQLIVPSVKAAYFSRILALA
CCCCCCCCCCEEEECCEECCCCCCCCCHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHH
DRYPPLFAALGLHPLYIAEHEDADLAALASHLADKPPKLVAIGEIGLDLYMDEPQFPHQL
HCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCEE
VILNMQLELAKQHDLPVILHSRRSHDPLAAALRKAALPRAGVIHGFAGSLAQAQAFIRLG
EEEEEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
YYIGVGGTITYKRAQKTRHVMASLPLSSLLLETDAPDMPLASFQGQANRPERAANVFAAL
EEEECCCEEEHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHH
CELRPEPADEIAAELMCNSQRLFSLPPLRP
HHCCCCCHHHHHHHHHHCCCCEECCCCCCC
>Mature Secondary Structure
MMRTPDKPMPYFIDTHCHFDFPPFTGDEAASLACAAEANVRQLIVPSVKAAYFSRILALA
CCCCCCCCCCEEEECCEECCCCCCCCCHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHH
DRYPPLFAALGLHPLYIAEHEDADLAALASHLADKPPKLVAIGEIGLDLYMDEPQFPHQL
HCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCEE
VILNMQLELAKQHDLPVILHSRRSHDPLAAALRKAALPRAGVIHGFAGSLAQAQAFIRLG
EEEEEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
YYIGVGGTITYKRAQKTRHVMASLPLSSLLLETDAPDMPLASFQGQANRPERAANVFAAL
EEEECCCEEEHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHH
CELRPEPADEIAAELMCNSQRLFSLPPLRP
HHCCCCCHHHHHHHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]