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The map label for this gene is araD [H]

Identifier: 221232751

GI number: 221232751

Start: 1997677

End: 1998381

Strand: Reverse

Name: araD [H]

Synonym: SPN23F_20540

Alternate gene names: 221232751

Gene position: 1998381-1997677 (Counterclockwise)

Preceding gene: 221232752

Following gene: 221232750

Centisome position: 89.96

GC content: 42.98

Gene sequence:

>705_bases
ATGAATCAAGTAATCAATGCTATGCGTAAACGAGTCTGTGATGCCAATCAATCATTGCCAAAACATGGACTTGTCAAATT
TACCTGGGGGAATGTATCTGAAGTTAATCGCGAACTCGGTGTCATTGTTATCAAACCATCAGGCGTGGATTATGACGAAT
TGACACCTGAAAACATGGTAGTGACTGATCTAGATGGTAAGATCCTAGAAGGGGATTTAAGACCATCTTCCGACCTCCCA
ACTCATGTGCAATTATATAAGGCTTGGTCAGAAATTGGTAGTGTGGTTCACACCCATTCGACAGAAGCTGTTGGTTGGGC
TCAGGCAGGTCGTGATATTCCTTTCTACGGAACAACCCATGCAGATTATTTCTACGGTTCAATCCCTTGCGCCCGTAGTT
TGACCAAGGACGAAGTAGAAGTGGCCTATGAAAAAGATACTGGCCTGGTTATCGTAGAAGAGTTTGAACATCGCGGACTT
AACCCGGTTGAAGTACCAGGAATTGTTGTACGCAATCACGGTCCATTCACCTGGGGCAAAAATCCAGAGAATGCTGTTTA
TCACTCTGTCGTACTAGAGGAAGTATCAAAGATGAATCGCTTTACAGAACAAATCAATCCAAGAGTTGGACCTGCTCCCC
AGTACATACTAGAAAAACACTACCAACGTAAACATGGACCAAATGCTTATTATGGTCAAAAGTAA

Upstream 100 bases:

>100_bases
TGGTCTGAAAATTGTGAAACAGTAGAAGAAACACGCGCAGCCATTCAAGAGGCGCAAGCTTTTCTCTATCCACTCATTAA
GAAAGCAGGTTTGATGTAAG

Downstream 100 bases:

>100_bases
GAACGATGAAGGAGGAGAAAAAGATAAATTTAGCTCCTCTTTTTACATTTGATTTTTATTGAGAGTAAAGTTGGAATTGA
AGTAATTTTAAAAGATTTTT

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKAWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK

Sequences:

>Translated_234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKAWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK
>Mature_234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKAWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=54.1125541125541, Blast_Score=270, Evalue=9e-74,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=52.1739130434783, Blast_Score=267, Evalue=6e-73,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=51.9480519480519, Blast_Score=264, Evalue=4e-72,
Organism=Escherichia coli, GI1789164, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26313; Mature: 26313

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMV
CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCEEEECCCCCCHHHCCCCCEE
VTDLDGKILEGDLRPSSDLPTHVQLYKAWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTH
EECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
ADYFYGSIPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGLNPVEVPGIVVRNHGPFTWGK
CCEEECCCCHHHCCCCCCEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEECCCCCCCCC
NPENAVYHSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMV
CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCEEEECCCCCCHHHCCCCCEE
VTDLDGKILEGDLRPSSDLPTHVQLYKAWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTH
EECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
ADYFYGSIPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGLNPVEVPGIVVRNHGPFTWGK
CCEEECCCCHHHCCCCCCEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEECCCCCCCCC
NPENAVYHSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA