| Definition | Streptococcus pneumoniae ATCC 700669, complete genome. |
|---|---|
| Accession | NC_011900 |
| Length | 2,221,315 |
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The map label for this gene is licR [H]
Identifier: 221232750
GI number: 221232750
Start: 1995825
End: 1997498
Strand: Reverse
Name: licR [H]
Synonym: SPN23F_20530
Alternate gene names: 221232750
Gene position: 1997498-1995825 (Counterclockwise)
Preceding gene: 221232751
Following gene: 221232749
Centisome position: 89.92
GC content: 33.09
Gene sequence:
>1674_bases ATGGTACTGGATAAGGCAAGTTGTGATTTGCTTCAATATTTGATGGATCAAGAAACGTCCAAAACGATTATGGCGATTTC GAAAGATTTGAAAGAGTCAAGAAGGAAAATTTATTATCACATTGACAAAATCAATGCTGCTCTGGTTGACGAGGCGCTTC ACATCATTAGTATTCCACGAATTGGTATTCACTTAACGGAAGAGCAGAGAGATGCTTGTTGTAAACTATTATCGGAAGTA GATTCGTACGATTATATCATGAGTGCGCATGAACGTATGATGATAATGTTACTATGGATAGGTATTTCTAAAGAACGTAT TACGATTGAAAAATTGATAGAGTTAACAGAGGTATCTAGGAATACTGTTCTCAATGATTTGAATAGTATTCGTTATCAAC TAACTTTGGAACAATATCAGGTGATCTTGCAAGTGAGCAAGTCACAGGGATACCACCTTCATGCCCACCCTCTTAATAAA ATTCAGTATCTTCAATCGCTTCTATATCATATTTTTATGGAAGAAAATGCCACTTTTGTATCTATTTTAGAAGATAAGAT GAAAGAGAGGTTAGATGATGAGTGTTTGCTTTCTGTTGAAATGAACCAATTTTTTAAGGAACAGGTTCCTTTAGTTGAAC AAGATTTAGGGAAGAAAATAAACCATCATGAAATAACTTTTATGTTGCAGGTTCTACCTTATTTGCTGTTAAGCTGTCAT AATGTTGAACAGTATCAAGAAAGACATCAGGATATAGAGAAAGAATTTTCTTTGATAAGAAAAAGAATAGAGTATCAGGT GTCTAAGAAATTAGGAGAACGGTTGTTTCAAAAGTTTGAAATTTCTTTGTCAGGACTTGAAGTTTCTCTTGTAGCTGTTC TCCTCCTCTCCTATCGTAAGGATTTGGATATTCATGCAGAAAGTGATGATTTTCGGCAATTAAAACTTGCTTTAGAAGAA TTTATCTGGTATTTTGAATCACAAATCCGAATGGAGATTGAGAACAAGGATGATTTGTTACGAAATTTGATGATCCACTG TAAAGCCTTGTTATTTAGAAAGACTTACGGTATTTTTTCTAAAAATCCTCTAACAAAACAAATTCGATCCAAGTATGGAG AATTATTTTTAGTCACTAGAAAATCTGCGGAAATTTTAGAAGGAGCATGGTTTATTCGGCTAACAGACGATGATATTGCC TATTTGACGATTCATATTGGAGGATTTTTAAAGTATACACCATCGTCTCAAAAAAATATGAAAAAAGTTTATCTCGTTTG TGATGAAGGTGTTGCGGTTTCGAGACTTTTGCTGAAACAATGCAAACTTTATTTTCCAAATGAGCAAATTGACACTGTAT TTACAACAGAACAATTTAAGAGTGTGGAAGATATTGCACAAGTTGATGTAGTGATTACTACTAATGATGATTTGGATAGC AGATTTCCGATTTTAAGGGTTAATCCTATCCTTGAAGCAGAAGATATTTTGAAAATGCTAGACTATCTTAAACACAATAT ATTTCGTAATAAGAGCAAAAGTTTCAGTGAAAATCTTTCTAGTCTTATTTCGTCTTATATTGTAGACAGCAAGTTGGCTA GTAAGTTCCAAGAAGAGGTTCAAACACTTATAAATAAAGAAATAGTAGTTCAAGCTTTTTTGGAAGATATTTGA
Upstream 100 bases:
>100_bases GAAGTAATTTTAAAAGATTTTTTAGAAATAGCGCTTGATATATATATGGTAAAATAAAAAGAATTGCTGTGATATCAATA GATTTGGGGGATTTTTTAAT
Downstream 100 bases:
>100_bases AGGACAGTCCAATGATGAACACAAACCTGTGTTTTTCTTGGTCTTTTTTAGTGTTTTGAAGGGTGGTATACTAATCTCAA AGATAACAATTATATCCAAA
Product: transcriptional antiterminator
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 557; Mature: 557
Protein sequence:
>557_residues MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALVDEALHIISIPRIGIHLTEEQRDACCKLLSEV DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVILQVSKSQGYHLHAHPLNK IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINKEIVVQAFLEDI
Sequences:
>Translated_557_residues MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALVDEALHIISIPRIGIHLTEEQRDACCKLLSEV DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVILQVSKSQGYHLHAHPLNK IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINKEIVVQAFLEDI >Mature_557_residues MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALVDEALHIISIPRIGIHLTEEQRDACCKLLSEV DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVILQVSKSQGYHLHAHPLNK IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINKEIVVQAFLEDI
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 65364; Mature: 65364
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALVDEALHIISIPR CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR CCEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH NTVLNDLNSIRYQLTLEQYQVILQVSKSQGYHLHAHPLNKIQYLQSLLYHIFMEENATFV HHHHHHHHHHHEEEEHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHH SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH HHHHHHHHHCCCHHHEEEHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM CCCHHHHHHHCCCCEEEEECCCHHHHCCEEEEEECCCCEEEEEEEECCEEEECCCCCCCC KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHEEEEEECCCCCCC RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEV CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTLINKEIVVQAFLEDI HHHHHHHHHHHHHHHCC >Mature Secondary Structure MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALVDEALHIISIPR CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR CCEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH NTVLNDLNSIRYQLTLEQYQVILQVSKSQGYHLHAHPLNKIQYLQSLLYHIFMEENATFV HHHHHHHHHHHEEEEHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHH SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH HHHHHHHHHCCCHHHEEEHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM CCCHHHHHHHCCCCEEEEECCCHHHHCCEEEEEECCCCEEEEEEEECCEEEECCCCCCCC KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHEEEEEECCCCCCC RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEV CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTLINKEIVVQAFLEDI HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]