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The map label for this gene is araQ [H]

Identifier: 221232417

GI number: 221232417

Start: 1619631

End: 1620470

Strand: Reverse

Name: araQ [H]

Synonym: SPN23F_16810

Alternate gene names: 221232417

Gene position: 1620470-1619631 (Counterclockwise)

Preceding gene: 221232418

Following gene: 221232416

Centisome position: 72.95

GC content: 42.5

Gene sequence:

>840_bases
ATGCAATCTACAGAAAAAAAACCATTAACAGCCTTTACTGTTATTTCAACAATCATTTTGCTCTTGTTGACTGTGCTGTT
CATCTTTCCATTCTACTGGATTTTGACAGGGGCATTCAAATCACAACCTGATACAATTGTTATTCCTCCTCAGTGGTTCC
CTAAAATGCCAACCATGGAAAACTTCCAACAACTCATGGTGCAGAACCCTGCCTTGCAATGGATGTGGAACTCAGTATTT
ATCTCATTGGTAACCATGTTCTTAGTCTGTGCAACCTCATCTCTAGCAGGTTATGTATTGGCTAAAAAACGTTTCTATGG
TCAACGCATTCTATTTGCTATCTTTATCGCTGCTATGGCGCTTCCAAAACAAGTTGTCCTTGTACCATTGGTACGTATCG
TCAACTTCATGGGAATCCACGATACTCTCTGGGCAGTTATCTTGCCTTTGATTGGATGGCCATTCGGTGTCTTCCTCATG
AAACAGTTCAGTGAAAATATCCCTACAGAGTTGCTTGAATCAGCTAAAATCGACGGTTGTGGTGAGATTCGTACCTTCTG
GAGTGTAGCCTTCCCGATTGTGAAACCAGGGTTTGCAGCCCTTGCAATCTTTACCTTCATCAATACTTGGAATGACTACT
TCATGCAATTGGTAATGTTGACTTCACGTAACAATTTGACCATCTCACTTGGGGTTGCGACCATGCAGGCTGAAATGGCA
ACCAACTATGGTTTGATTATGGCAGGAGCTGCCCTTGCTGCTGTTCCAATCGTCACAGTCTTCCTAGTCTTCCAAAAATC
CTTCACACAGGGTATTACTATGGGAGCGGTCAAAGGATAA

Upstream 100 bases:

>100_bases
CACAATTGGTGTCTTCTTGGCAATCATGATTGCTATCGTAAGCTTTGTTCAATTTAAAGTACTTGGAAACGACGTAGAAT
ACTAAAGAAAGGAGACAGCT

Downstream 100 bases:

>100_bases
TACTCTGAGAAAATCTCTTCAAACTACGTCAGCGTCACCTTGCCATACTTAAGTATTGCCTGCGGTTAGCTTCCTAGTTT
GTTCTTCAATTTTCATTGAG

Product: transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MQSTEKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIVIPPQWFPKMPTMENFQQLMVQNPALQWMWNSVF
ISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMALPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLM
KQFSENIPTELLESAKIDGCGEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMA
TNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG

Sequences:

>Translated_279_residues
MQSTEKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIVIPPQWFPKMPTMENFQQLMVQNPALQWMWNSVF
ISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMALPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLM
KQFSENIPTELLESAKIDGCGEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMA
TNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
>Mature_279_residues
MQSTEKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIVIPPQWFPKMPTMENFQQLMVQNPALQWMWNSVF
ISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMALPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLM
KQFSENIPTELLESAKIDGCGEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMA
TNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=26.6903914590747, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789860, Length=276, Percent_Identity=27.8985507246377, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=28.110599078341, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31192; Mature: 31192

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTEKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIVIPPQWFPKMPTME
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH
NFQQLMVQNPALQWMWNSVFISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLMKQFSENIPTELLESAKIDGC
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCC
GEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
TNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQSTEKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIVIPPQWFPKMPTME
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH
NFQQLMVQNPALQWMWNSVFISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLMKQFSENIPTELLESAKIDGC
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCC
GEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
TNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]