Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 220933087

GI number: 220933087

Start: 2458817

End: 2459809

Strand: Reverse

Name: ybbK [C]

Synonym: Hore_22550

Alternate gene names: 220933087

Gene position: 2459809-2458817 (Counterclockwise)

Preceding gene: 220933088

Following gene: 220933086

Centisome position: 95.41

GC content: 39.48

Gene sequence:

>993_bases
ATGAAAAACATCAGTGTTGACAAAATTCTGACCTGGTTGACCCTGGGTATTATCCGGTTTGTGTATGTCAGGGAGGGCAC
CAATGTTATTATAACCAGATTCGGAAAATATGTCAGGACCCTGAAACCTGGCCTGAACTGGTTCCTTTCCCTGTCTGGAT
TATTAGGGCAGATACATTATTACTATGTTACTGACCCCAATACCCTTGAAGTAAAACACACCCATGAAATAGATATGAAG
GAGATTGTATTTGATTTTCCCAAAGAAAAGGTAATCTCAAAGGACAATGTAGAATTTAAAGTAGATGCAATTGTTTTTTT
CAGAGTTGTAGAACCGAGAAAAGCGGTCTTTAATGTCAATGATTATGTTAAGTCCCTTCAGCTTACTATTCGTTCTATAC
TGAGGGATGAAATTGGACGGTATAACCTGGAGCAGGTGTACTGTAGCCGGGGGAAAATATCACGTAACCTCGAAGTAGAA
GCAGATAAAGCCGTAACTAACTGGGGTCTTGATGTAACCCAGCTGGAGATTAAGGAGTTTGAACTGGGGGATTTTGCCCG
GGAATTGATTGAACAAAAGCAGGAGGAACTGGAGAAGAGAAAACAAATACTCAGGGCTGAAGGATTAAAAGAGGCTAAAA
TTCAGGAAGGAGAGGCCTTAAAGGCATATGCCGAGATGGAAGCGGAGGCAATCAGGATCAAGGCCCGGGCCCGTGCTGAA
GCTGAAAAATATAAATTTGATGCTGAGGTCTATGGTTATAAGAAAATTGCGAAGATAATTAAAGAAGAACCCACTATTCT
AACCAATTATTTTCAGTTACATAATGCCGAAAAAATAAGTCAAAATCTGGGGCAAGGGCAGGCGACTACTGTCTTTTTGC
CCAGTGATATGAGGTTGATGGTCAGGGCTTTGAATGTTTTTAATGAAAGTAAAGATTTAAATGATAATATAAGTAATAAA
GAAATGGAGAATAATAATCAGACTCAAGTTTAG

Upstream 100 bases:

>100_bases
TCAAAGATATATTTCTTTGAATAAACGTTAGAACAGTTCTAATAATACCAATATTGAAATAATCATTAATAGACCAAACT
ATCTATCTGGGGGAATACTT

Downstream 100 bases:

>100_bases
CTATACCCTGACTCCGGCTTATCTAAGCCTTATCTAAAAATTATATAAATTTAAAAAAGTCCCTTGACTTTGGAAGAATA
TTTAATTATAATAATTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKNISVDKILTWLTLGIIRFVYVREGTNVIITRFGKYVRTLKPGLNWFLSLSGLLGQIHYYYVTDPNTLEVKHTHEIDMK
EIVFDFPKEKVISKDNVEFKVDAIVFFRVVEPRKAVFNVNDYVKSLQLTIRSILRDEIGRYNLEQVYCSRGKISRNLEVE
ADKAVTNWGLDVTQLEIKEFELGDFARELIEQKQEELEKRKQILRAEGLKEAKIQEGEALKAYAEMEAEAIRIKARARAE
AEKYKFDAEVYGYKKIAKIIKEEPTILTNYFQLHNAEKISQNLGQGQATTVFLPSDMRLMVRALNVFNESKDLNDNISNK
EMENNNQTQV

Sequences:

>Translated_330_residues
MKNISVDKILTWLTLGIIRFVYVREGTNVIITRFGKYVRTLKPGLNWFLSLSGLLGQIHYYYVTDPNTLEVKHTHEIDMK
EIVFDFPKEKVISKDNVEFKVDAIVFFRVVEPRKAVFNVNDYVKSLQLTIRSILRDEIGRYNLEQVYCSRGKISRNLEVE
ADKAVTNWGLDVTQLEIKEFELGDFARELIEQKQEELEKRKQILRAEGLKEAKIQEGEALKAYAEMEAEAIRIKARARAE
AEKYKFDAEVYGYKKIAKIIKEEPTILTNYFQLHNAEKISQNLGQGQATTVFLPSDMRLMVRALNVFNESKDLNDNISNK
EMENNNQTQV
>Mature_330_residues
MKNISVDKILTWLTLGIIRFVYVREGTNVIITRFGKYVRTLKPGLNWFLSLSGLLGQIHYYYVTDPNTLEVKHTHEIDMK
EIVFDFPKEKVISKDNVEFKVDAIVFFRVVEPRKAVFNVNDYVKSLQLTIRSILRDEIGRYNLEQVYCSRGKISRNLEVE
ADKAVTNWGLDVTQLEIKEFELGDFARELIEQKQEELEKRKQILRAEGLKEAKIQEGEALKAYAEMEAEAIRIKARARAE
AEKYKFDAEVYGYKKIAKIIKEEPTILTNYFQLHNAEKISQNLGQGQATTVFLPSDMRLMVRALNVFNESKDLNDNISNK
EMENNNQTQV

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=202, Percent_Identity=25.7425742574257, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI38016911, Length=107, Percent_Identity=33.6448598130841, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI221316744, Length=156, Percent_Identity=26.2820512820513, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI21686995, Length=156, Percent_Identity=26.2820512820513, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1786697, Length=273, Percent_Identity=28.2051282051282, Blast_Score=111, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=319, Percent_Identity=26.0188087774295, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17569493, Length=213, Percent_Identity=23.943661971831, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193209764, Length=213, Percent_Identity=23.943661971831, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17569499, Length=107, Percent_Identity=34.5794392523364, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI25153583, Length=226, Percent_Identity=28.3185840707965, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71987612, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71987621, Length=226, Percent_Identity=28.3185840707965, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71989948, Length=160, Percent_Identity=27.5, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193210507, Length=107, Percent_Identity=31.7757009345794, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17570161, Length=107, Percent_Identity=31.7757009345794, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71989955, Length=162, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17570459, Length=230, Percent_Identity=27.8260869565217, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32566490, Length=107, Percent_Identity=27.1028037383178, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569497, Length=139, Percent_Identity=25.8992805755396, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45550506, Length=204, Percent_Identity=26.9607843137255, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI45556022, Length=108, Percent_Identity=36.1111111111111, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI18860517, Length=107, Percent_Identity=32.7102803738318, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24657857, Length=180, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281365664, Length=106, Percent_Identity=32.0754716981132, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI62484448, Length=180, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI62484274, Length=180, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281361631, Length=230, Percent_Identity=24.7826086956522, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281361633, Length=230, Percent_Identity=24.7826086956522, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21356845, Length=202, Percent_Identity=23.7623762376238, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 38343; Mature: 38343

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNISVDKILTWLTLGIIRFVYVREGTNVIITRFGKYVRTLKPGLNWFLSLSGLLGQIHY
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
YYVTDPNTLEVKHTHEIDMKEIVFDFPKEKVISKDNVEFKVDAIVFFRVVEPRKAVFNVN
EEEECCCEEEEEECCCCCHHHHHHHCCHHHHCCCCCCEEEEEEEEEEEEECCHHHHCCHH
DYVKSLQLTIRSILRDEIGRYNLEQVYCSRGKISRNLEVEADKAVTNWGLDVTQLEIKEF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEECCHHHHHCCCCEEEEEHHHH
ELGDFARELIEQKQEELEKRKQILRAEGLKEAKIQEGEALKAYAEMEAEAIRIKARARAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AEKYKFDAEVYGYKKIAKIIKEEPTILTNYFQLHNAEKISQNLGQGQATTVFLPSDMRLM
HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCEEEEEECCHHHHH
VRALNVFNESKDLNDNISNKEMENNNQTQV
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNISVDKILTWLTLGIIRFVYVREGTNVIITRFGKYVRTLKPGLNWFLSLSGLLGQIHY
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
YYVTDPNTLEVKHTHEIDMKEIVFDFPKEKVISKDNVEFKVDAIVFFRVVEPRKAVFNVN
EEEECCCEEEEEECCCCCHHHHHHHCCHHHHCCCCCCEEEEEEEEEEEEECCHHHHCCHH
DYVKSLQLTIRSILRDEIGRYNLEQVYCSRGKISRNLEVEADKAVTNWGLDVTQLEIKEF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEECCHHHHHCCCCEEEEEHHHH
ELGDFARELIEQKQEELEKRKQILRAEGLKEAKIQEGEALKAYAEMEAEAIRIKARARAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AEKYKFDAEVYGYKKIAKIIKEEPTILTNYFQLHNAEKISQNLGQGQATTVFLPSDMRLM
HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCEEEEEECCHHHHH
VRALNVFNESKDLNDNISNKEMENNNQTQV
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]