Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
---|---|
Accession | NC_011899 |
Length | 2,578,146 |
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The map label for this gene is 220932677
Identifier: 220932677
GI number: 220932677
Start: 1965906
End: 1967387
Strand: Direct
Name: 220932677
Synonym: Hore_18410
Alternate gene names: NA
Gene position: 1965906-1967387 (Clockwise)
Preceding gene: 220932656
Following gene: 220932714
Centisome position: 76.25
GC content: 42.58
Gene sequence:
>1482_bases ATGGAGAAGAAAGAACAATGGGGAAGTCGTCTTGGATTTATATTTGCTGCTATAGGTTCTGCTGTAGGATTGGGTAATAT CTGGCGTTTTTCCTATCAGGCTTATGAAAATGGTGGTGGGGCATTTTTACTACCTTATCTAGTAGCCCTATTTACAGCCG GTATCCCACTGTTAATTCTGGAGCTTGGACTCGGGTTCAGGACCAGGTCATCAGCCCCCCTATCTTTCAAAAAGATCGGA AAAAAATATGAATGGATTGGCTGGTGGTCAGTCGGGGTTGGTTTTGTAATCACCGTTTATTATACTGTAATTATCGGGTG GAGCCTGGCCTATGTCTTTAAGGCCTTTAATCTTAACTGGGGTTCAAACCCTGCTTCCCACTTTACAGGTGAATTTCTGG GCGCAACCGGAAGTGTCTGGGAACTTGGTGGTATCAGGTTTTTTGCGCTGGCATGTCTCATAATTGTCTGGCTGGCCAAT TATTTTATCATATCAAGGGGTGTCCAGAAGGGTATCGAAAAGGCCAGTAAAATTTTTATGCCTTTATTGTTCTTCCTGGT TATATTAATTACAATCAGGGGAATCACCCTGCCGGGGTCTATTGAAGGTATTAAAGCCTTTGTTACTCCTGATTTCAGTA AAATCACCGACTGGAGGATCTGGGTCAGTGCCTTTGGGCAGATCTTTTTTACTTTAAGCCTTGGTTTTGGTATTATGATT GCTTATGCCAGTTACCTGCCTAAGGATTCTGACGTTGTCAGTAACGGAATAATTACCGCACTGGCTAACAGTGCCTTCAG TATTATTACCGGTTTTGGTGTCTTCGGTGTTCTGGGATATATGGCCATGAAACAGGGAGTCCCTGTATCTGAAGTAGCTA CTGATGGAATTGGACTGGCTTTTATTGCCTTCCCCAAGGCCATAAACCTGCTCCCGGCCGCTTCCAGGATTTTCGGAGTC TTATTCTTCCTGTCCCTGGTTATTGCCGGGCTAAGTTCCAGCATATCACTGGTAGAGGCTATGGTAGCAGCCTTAATCGA TAAATTTGAAATTTCCCGTAAAAAAGCCGTCACCTATATCTGTATTATAAGTTTAATCCTCGGTATTCCATTCGTAACCG GTGGTGGCCTGGTATTACTGGATATTGTTGATCATTTCATAAACCGGTATGGTTTGTTACTCGTCGGTTTTGTTGAACTT GTAGTAATAAGCTACTTCTTCGGAGTAGATAAAATTAAAAAGGCTGTGAATCCTTCCTCAAACACAGAGGTGGGCCCAAC CTGGTCGATTATGGTTAAATATTTAAGCCCTCTGGCTCTGATTTTTGCTCTATTTTTAGAACTGATAAAGGATTTAACCA GTCTTTACGGAAACTACACTTCGCTGGAGATAATTCTCTTCGGCTGGGGTACAGTTCTGATTGTTATTCTCCTGGCCTTT AACCTGGCCAGAAGAGAGATAACTTTAAAAACCAATGTATAA
Upstream 100 bases:
>100_bases AATAAGAAGGAGAAGATTTGCAGGCAGTGGGAATAGGGAGAAGAAACCATTAACGGTTACATTATTTAATTTAACAATTT ACCAAATAAGGAGGAAGAAG
Downstream 100 bases:
>100_bases ATCTGACTTATAAAGTAAATACACTCTTATAAACAATGAAACTCATGTAATATTATTATATTATTAAAGCCCTATCTTCC GGTTTAAGAATAACCGGGAT
Product: sodium:neurotransmitter symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MEKKEQWGSRLGFIFAAIGSAVGLGNIWRFSYQAYENGGGAFLLPYLVALFTAGIPLLILELGLGFRTRSSAPLSFKKIG KKYEWIGWWSVGVGFVITVYYTVIIGWSLAYVFKAFNLNWGSNPASHFTGEFLGATGSVWELGGIRFFALACLIIVWLAN YFIISRGVQKGIEKASKIFMPLLFFLVILITIRGITLPGSIEGIKAFVTPDFSKITDWRIWVSAFGQIFFTLSLGFGIMI AYASYLPKDSDVVSNGIITALANSAFSIITGFGVFGVLGYMAMKQGVPVSEVATDGIGLAFIAFPKAINLLPAASRIFGV LFFLSLVIAGLSSSISLVEAMVAALIDKFEISRKKAVTYICIISLILGIPFVTGGGLVLLDIVDHFINRYGLLLVGFVEL VVISYFFGVDKIKKAVNPSSNTEVGPTWSIMVKYLSPLALIFALFLELIKDLTSLYGNYTSLEIILFGWGTVLIVILLAF NLARREITLKTNV
Sequences:
>Translated_493_residues MEKKEQWGSRLGFIFAAIGSAVGLGNIWRFSYQAYENGGGAFLLPYLVALFTAGIPLLILELGLGFRTRSSAPLSFKKIG KKYEWIGWWSVGVGFVITVYYTVIIGWSLAYVFKAFNLNWGSNPASHFTGEFLGATGSVWELGGIRFFALACLIIVWLAN YFIISRGVQKGIEKASKIFMPLLFFLVILITIRGITLPGSIEGIKAFVTPDFSKITDWRIWVSAFGQIFFTLSLGFGIMI AYASYLPKDSDVVSNGIITALANSAFSIITGFGVFGVLGYMAMKQGVPVSEVATDGIGLAFIAFPKAINLLPAASRIFGV LFFLSLVIAGLSSSISLVEAMVAALIDKFEISRKKAVTYICIISLILGIPFVTGGGLVLLDIVDHFINRYGLLLVGFVEL VVISYFFGVDKIKKAVNPSSNTEVGPTWSIMVKYLSPLALIFALFLELIKDLTSLYGNYTSLEIILFGWGTVLIVILLAF NLARREITLKTNV >Mature_493_residues MEKKEQWGSRLGFIFAAIGSAVGLGNIWRFSYQAYENGGGAFLLPYLVALFTAGIPLLILELGLGFRTRSSAPLSFKKIG KKYEWIGWWSVGVGFVITVYYTVIIGWSLAYVFKAFNLNWGSNPASHFTGEFLGATGSVWELGGIRFFALACLIIVWLAN YFIISRGVQKGIEKASKIFMPLLFFLVILITIRGITLPGSIEGIKAFVTPDFSKITDWRIWVSAFGQIFFTLSLGFGIMI AYASYLPKDSDVVSNGIITALANSAFSIITGFGVFGVLGYMAMKQGVPVSEVATDGIGLAFIAFPKAINLLPAASRIFGV LFFLSLVIAGLSSSISLVEAMVAALIDKFEISRKKAVTYICIISLILGIPFVTGGGLVLLDIVDHFINRYGLLLVGFVEL VVISYFFGVDKIKKAVNPSSNTEVGPTWSIMVKYLSPLALIFALFLELIKDLTSLYGNYTSLEIILFGWGTVLIVILLAF NLARREITLKTNV
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI289191351, Length=498, Percent_Identity=32.1285140562249, Blast_Score=259, Evalue=3e-69, Organism=Homo sapiens, GI4557046, Length=498, Percent_Identity=32.1285140562249, Blast_Score=259, Evalue=3e-69, Organism=Homo sapiens, GI21361581, Length=496, Percent_Identity=31.6532258064516, Blast_Score=259, Evalue=4e-69, Organism=Homo sapiens, GI289191377, Length=498, Percent_Identity=32.1285140562249, Blast_Score=259, Evalue=4e-69, Organism=Homo sapiens, GI4507041, Length=497, Percent_Identity=31.3883299798793, Blast_Score=255, Evalue=7e-68, Organism=Homo sapiens, GI171184408, Length=497, Percent_Identity=32.9979879275654, Blast_Score=252, Evalue=6e-67, Organism=Homo sapiens, GI171184406, Length=497, Percent_Identity=32.9979879275654, Blast_Score=252, Evalue=6e-67, Organism=Homo sapiens, GI171184404, Length=497, Percent_Identity=32.9979879275654, Blast_Score=252, Evalue=6e-67, Organism=Homo sapiens, GI7657587, Length=502, Percent_Identity=31.4741035856574, Blast_Score=241, Evalue=8e-64, Organism=Homo sapiens, GI188528618, Length=490, Percent_Identity=31.4285714285714, Blast_Score=238, Evalue=7e-63, Organism=Homo sapiens, GI4507043, Length=502, Percent_Identity=31.2749003984064, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI197276623, Length=526, Percent_Identity=30.7984790874525, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI54607094, Length=526, Percent_Identity=30.7984790874525, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI134304856, Length=498, Percent_Identity=30.9236947791165, Blast_Score=226, Evalue=3e-59, Organism=Homo sapiens, GI92859670, Length=524, Percent_Identity=30.5343511450382, Blast_Score=225, Evalue=7e-59, Organism=Homo sapiens, GI67782317, Length=541, Percent_Identity=30.1293900184843, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI67782315, Length=541, Percent_Identity=30.1293900184843, Blast_Score=209, Evalue=4e-54, Organism=Homo sapiens, GI67782313, Length=541, Percent_Identity=30.1293900184843, Blast_Score=209, Evalue=4e-54, Organism=Homo sapiens, GI11181770, Length=530, Percent_Identity=30.188679245283, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI5032097, Length=462, Percent_Identity=30.3030303030303, Blast_Score=199, Evalue=4e-51, Organism=Homo sapiens, GI194018524, Length=564, Percent_Identity=28.9007092198582, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI51468073, Length=531, Percent_Identity=27.683615819209, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI289191353, Length=415, Percent_Identity=30.3614457831325, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI218563756, Length=462, Percent_Identity=29.4372294372294, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI12408638, Length=514, Percent_Identity=28.988326848249, Blast_Score=175, Evalue=7e-44, Organism=Homo sapiens, GI58219014, Length=306, Percent_Identity=36.6013071895425, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI33354281, Length=302, Percent_Identity=36.0927152317881, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI300360519, Length=412, Percent_Identity=28.8834951456311, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI218563758, Length=281, Percent_Identity=33.0960854092527, Blast_Score=139, Evalue=7e-33, Organism=Homo sapiens, GI6005715, Length=258, Percent_Identity=32.9457364341085, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI21361693, Length=231, Percent_Identity=36.3636363636364, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI226437581, Length=250, Percent_Identity=33.2, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI197276625, Length=144, Percent_Identity=37.5, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI55749589, Length=319, Percent_Identity=26.0188087774295, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17555248, Length=511, Percent_Identity=31.7025440313112, Blast_Score=244, Evalue=5e-65, Organism=Caenorhabditis elegans, GI25146584, Length=460, Percent_Identity=31.304347826087, Blast_Score=214, Evalue=1e-55, Organism=Caenorhabditis elegans, GI71995588, Length=453, Percent_Identity=28.0353200883002, Blast_Score=201, Evalue=9e-52, Organism=Caenorhabditis elegans, GI133952791, Length=523, Percent_Identity=28.4894837476099, Blast_Score=199, Evalue=4e-51, Organism=Caenorhabditis elegans, GI17554804, Length=462, Percent_Identity=26.8398268398268, Blast_Score=174, Evalue=1e-43, Organism=Caenorhabditis elegans, GI17535731, Length=482, Percent_Identity=26.3485477178423, Blast_Score=168, Evalue=5e-42, Organism=Caenorhabditis elegans, GI212642127, Length=514, Percent_Identity=25.6809338521401, Blast_Score=164, Evalue=8e-41, Organism=Caenorhabditis elegans, GI17569475, Length=451, Percent_Identity=23.5033259423503, Blast_Score=155, Evalue=3e-38, Organism=Caenorhabditis elegans, GI115534083, Length=512, Percent_Identity=22.265625, Blast_Score=131, Evalue=9e-31, Organism=Caenorhabditis elegans, GI71998244, Length=249, Percent_Identity=32.9317269076305, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17542050, Length=357, Percent_Identity=27.4509803921569, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17542048, Length=476, Percent_Identity=21.0084033613445, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25143236, Length=472, Percent_Identity=20.5508474576271, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45550877, Length=533, Percent_Identity=31.7073170731707, Blast_Score=249, Evalue=2e-66, Organism=Drosophila melanogaster, GI17136952, Length=451, Percent_Identity=30.1552106430155, Blast_Score=241, Evalue=9e-64, Organism=Drosophila melanogaster, GI281364394, Length=451, Percent_Identity=30.1552106430155, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI28574704, Length=451, Percent_Identity=30.1552106430155, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI17136950, Length=451, Percent_Identity=30.1552106430155, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI28574702, Length=451, Percent_Identity=30.1552106430155, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI24762620, Length=481, Percent_Identity=32.8482328482328, Blast_Score=238, Evalue=1e-62, Organism=Drosophila melanogaster, GI24639514, Length=497, Percent_Identity=30.784708249497, Blast_Score=227, Evalue=1e-59, Organism=Drosophila melanogaster, GI221329674, Length=497, Percent_Identity=30.784708249497, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI45551183, Length=427, Percent_Identity=33.7236533957845, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI24639516, Length=517, Percent_Identity=29.5938104448743, Blast_Score=219, Evalue=3e-57, Organism=Drosophila melanogaster, GI281365034, Length=487, Percent_Identity=31.8275154004107, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI281364136, Length=554, Percent_Identity=28.3393501805054, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI24655079, Length=514, Percent_Identity=31.1284046692607, Blast_Score=209, Evalue=5e-54, Organism=Drosophila melanogaster, GI24582567, Length=510, Percent_Identity=29.2156862745098, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI19921352, Length=493, Percent_Identity=30.2231237322515, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24584353, Length=493, Percent_Identity=30.2231237322515, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI281363702, Length=490, Percent_Identity=29.1836734693878, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI19921936, Length=507, Percent_Identity=29.3885601577909, Blast_Score=199, Evalue=5e-51, Organism=Drosophila melanogaster, GI24652942, Length=480, Percent_Identity=29.1666666666667, Blast_Score=194, Evalue=9e-50, Organism=Drosophila melanogaster, GI45551088, Length=480, Percent_Identity=29.1666666666667, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24661428, Length=483, Percent_Identity=28.3643892339545, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI24654186, Length=333, Percent_Identity=35.4354354354354, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24639853, Length=507, Percent_Identity=27.810650887574, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24582569, Length=471, Percent_Identity=27.8131634819533, Blast_Score=162, Evalue=4e-40, Organism=Drosophila melanogaster, GI281363700, Length=340, Percent_Identity=32.3529411764706, Blast_Score=154, Evalue=2e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 53874; Mature: 53874
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKEQWGSRLGFIFAAIGSAVGLGNIWRFSYQAYENGGGAFLLPYLVALFTAGIPLLIL CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHH ELGLGFRTRSSAPLSFKKIGKKYEWIGWWSVGVGFVITVYYTVIIGWSLAYVFKAFNLNW HHCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GSNPASHFTGEFLGATGSVWELGGIRFFALACLIIVWLANYFIISRGVQKGIEKASKIFM CCCCHHHCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLLFFLVILITIRGITLPGSIEGIKAFVTPDFSKITDWRIWVSAFGQIFFTLSLGFGIMI HHHHHHHHHHHHCCCCCCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYASYLPKDSDVVSNGIITALANSAFSIITGFGVFGVLGYMAMKQGVPVSEVATDGIGLA HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHH FIAFPKAINLLPAASRIFGVLFFLSLVIAGLSSSISLVEAMVAALIDKFEISRKKAVTYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CIISLILGIPFVTGGGLVLLDIVDHFINRYGLLLVGFVELVVISYFFGVDKIKKAVNPSS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NTEVGPTWSIMVKYLSPLALIFALFLELIKDLTSLYGNYTSLEIILFGWGTVLIVILLAF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHH NLARREITLKTNV HHHHHEEEEECCC >Mature Secondary Structure MEKKEQWGSRLGFIFAAIGSAVGLGNIWRFSYQAYENGGGAFLLPYLVALFTAGIPLLIL CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHH ELGLGFRTRSSAPLSFKKIGKKYEWIGWWSVGVGFVITVYYTVIIGWSLAYVFKAFNLNW HHCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GSNPASHFTGEFLGATGSVWELGGIRFFALACLIIVWLANYFIISRGVQKGIEKASKIFM CCCCHHHCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLLFFLVILITIRGITLPGSIEGIKAFVTPDFSKITDWRIWVSAFGQIFFTLSLGFGIMI HHHHHHHHHHHHCCCCCCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYASYLPKDSDVVSNGIITALANSAFSIITGFGVFGVLGYMAMKQGVPVSEVATDGIGLA HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHH FIAFPKAINLLPAASRIFGVLFFLSLVIAGLSSSISLVEAMVAALIDKFEISRKKAVTYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CIISLILGIPFVTGGGLVLLDIVDHFINRYGLLLVGFVELVVISYFFGVDKIKKAVNPSS HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NTEVGPTWSIMVKYLSPLALIFALFLELIKDLTSLYGNYTSLEIILFGWGTVLIVILLAF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHH NLARREITLKTNV HHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]