Click here to switch to the map view.

The map label for this gene is yhbA [H]

Identifier: 220931917

GI number: 220931917

Start: 1168401

End: 1169504

Strand: Direct

Name: yhbA [H]

Synonym: Hore_10760

Alternate gene names: 220931917

Gene position: 1168401-1169504 (Clockwise)

Preceding gene: 220931916

Following gene: 220931918

Centisome position: 45.32

GC content: 38.68

Gene sequence:

>1104_bases
ATGGATTTAACTACAATGATAAAAGCAAAAGCCAGGGATATAGGGTTTGATATAGTGGGTATAACTTCTGCCGCTCCGTT
ACTAAAAGCCCGGGAGGTACTGGAAAAGCGGAAGGAGGCCGGGCAATTACCAGGTTTTACTGATGAAGATATTTTATTAT
CAACCACCCCCCGGATGCACCTGGAGGATGCCAGGTCCATCATAGCCCTGGCAATGTCCTATGCCAGTAAAGTAGAGTTT
GATGAGGAGGTTTATATTGCCCTTTATGCCCGGGGTAAGGATTATCACACTATTATGAGGAATAAAATGAATGAGCTTAT
TGACTTTATAAAAAATATAAATCCAGAGTCTAACTGTAAATCATTTGTAGATACCGGACCATTACTGGATAAAGAAATAG
CAGCCCGGGCAGGCCTGGGATGGATCGGGAAAAATAATTTATTAATCAACCCTGAATATGGTTCATTCCTGGTTTTGGGG
GAAATATTAACCAGTCTGGAGTTAAAATATGATAATCCCATAGAAAATGGGTGTAAAAACTGTCAGGCCTGTATTCAAAT
GTGCCCAACAGGGGCATTAAAACCCTATTACCTGGATTTATCGCGCTGTAGAAGTAATATCACCCAAAAGACAGGTATAT
TATCTGAAGAAGAAAAAAAGGCTATTGGTGAAAACCTCTGGGGTTGCGATTCGTGCCAGATGGTTTGTCCTTATAACGAA
AACCTTCCTCTGGACTTACATCCAGAATATAGACCGGTCCTCCCGGGAAAAATAGAAGAAGTCTTAGGTCTGACAAAGAA
AAATATGGGAGATCAATGGAAGAACTCACCCATGATGTGGAGAGGGACTAATATAATTAAAAGAAATGCCTTAATAAACC
TGGTCAATTTATATAACAAAGGAGTAAATATAACAGATGTGCTGGAAATTATTAAAAAGGGGTTAAAGAGTCCTTCTCCG
GTTGTCCGAATCACTGCAGCGTGGGCTGCCGGTAAAATTAAGGCCAGGGAATTAAAGGACTTTATTTTAAAGTTATTGAA
ATCAGAAAAAGATAAGGTTGTAGAAAATTATTTTAAAAAGGTTATAAAAAGATTAAATCAATAA

Upstream 100 bases:

>100_bases
GACTTTTTTATAATTGGTCACAAAACCGGTCTTATAAATTTTCTATTATATGGGGCTTGAAAATTTGGTTATAACAGGAA
TTTAGATAGGATGGAAAAAG

Downstream 100 bases:

>100_bases
ATATTTTATGGTTATTAGGCCAGGAGGTATATTATGATTGAAGTCTATATTAATGAAAAAAAATACAGTTTTGATAAGGG
TATAACCGTTGAGGAGGTTG

Product: iron-sulfur cluster binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDLTTMIKAKARDIGFDIVGITSAAPLLKAREVLEKRKEAGQLPGFTDEDILLSTTPRMHLEDARSIIALAMSYASKVEF
DEEVYIALYARGKDYHTIMRNKMNELIDFIKNINPESNCKSFVDTGPLLDKEIAARAGLGWIGKNNLLINPEYGSFLVLG
EILTSLELKYDNPIENGCKNCQACIQMCPTGALKPYYLDLSRCRSNITQKTGILSEEEKKAIGENLWGCDSCQMVCPYNE
NLPLDLHPEYRPVLPGKIEEVLGLTKKNMGDQWKNSPMMWRGTNIIKRNALINLVNLYNKGVNITDVLEIIKKGLKSPSP
VVRITAAWAAGKIKARELKDFILKLLKSEKDKVVENYFKKVIKRLNQ

Sequences:

>Translated_367_residues
MDLTTMIKAKARDIGFDIVGITSAAPLLKAREVLEKRKEAGQLPGFTDEDILLSTTPRMHLEDARSIIALAMSYASKVEF
DEEVYIALYARGKDYHTIMRNKMNELIDFIKNINPESNCKSFVDTGPLLDKEIAARAGLGWIGKNNLLINPEYGSFLVLG
EILTSLELKYDNPIENGCKNCQACIQMCPTGALKPYYLDLSRCRSNITQKTGILSEEEKKAIGENLWGCDSCQMVCPYNE
NLPLDLHPEYRPVLPGKIEEVLGLTKKNMGDQWKNSPMMWRGTNIIKRNALINLVNLYNKGVNITDVLEIIKKGLKSPSP
VVRITAAWAAGKIKARELKDFILKLLKSEKDKVVENYFKKVIKRLNQ
>Mature_367_residues
MDLTTMIKAKARDIGFDIVGITSAAPLLKAREVLEKRKEAGQLPGFTDEDILLSTTPRMHLEDARSIIALAMSYASKVEF
DEEVYIALYARGKDYHTIMRNKMNELIDFIKNINPESNCKSFVDTGPLLDKEIAARAGLGWIGKNNLLINPEYGSFLVLG
EILTSLELKYDNPIENGCKNCQACIQMCPTGALKPYYLDLSRCRSNITQKTGILSEEEKKAIGENLWGCDSCQMVCPYNE
NLPLDLHPEYRPVLPGKIEEVLGLTKKNMGDQWKNSPMMWRGTNIIKRNALINLVNLYNKGVNITDVLEIIKKGLKSPSP
VVRITAAWAAGKIKARELKDFILKLLKSEKDKVVENYFKKVIKRLNQ

Specific function: Unknown

COG id: COG1600

COG function: function code C; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HEAT-like PBS-type repeats [H]

Homologues:

Organism=Escherichia coli, GI1790608, Length=277, Percent_Identity=34.6570397111913, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004453
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR013542
- InterPro:   IPR009051
- InterPro:   IPR004155 [H]

Pfam domain/function: PF08331 DUF1730; PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 41358; Mature: 41358

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTTMIKAKARDIGFDIVGITSAAPLLKAREVLEKRKEAGQLPGFTDEDILLSTTPRMH
CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH
LEDARSIIALAMSYASKVEFDEEVYIALYARGKDYHTIMRNKMNELIDFIKNINPESNCK
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
SFVDTGPLLDKEIAARAGLGWIGKNNLLINPEYGSFLVLGEILTSLELKYDNPIENGCKN
HHHHCCCCHHHHHHHHCCCCEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
CQACIQMCPTGALKPYYLDLSRCRSNITQKTGILSEEEKKAIGENLWGCDSCQMVCPYNE
HHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEECCCCC
NLPLDLHPEYRPVLPGKIEEVLGLTKKNMGDQWKNSPMMWRGTNIIKRNALINLVNLYNK
CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHCC
GVNITDVLEIIKKGLKSPSPVVRITAAWAAGKIKARELKDFILKLLKSEKDKVVENYFKK
CCCHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIKRLNQ
HHHHHCC
>Mature Secondary Structure
MDLTTMIKAKARDIGFDIVGITSAAPLLKAREVLEKRKEAGQLPGFTDEDILLSTTPRMH
CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH
LEDARSIIALAMSYASKVEFDEEVYIALYARGKDYHTIMRNKMNELIDFIKNINPESNCK
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
SFVDTGPLLDKEIAARAGLGWIGKNNLLINPEYGSFLVLGEILTSLELKYDNPIENGCKN
HHHHCCCCHHHHHHHHCCCCEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
CQACIQMCPTGALKPYYLDLSRCRSNITQKTGILSEEEKKAIGENLWGCDSCQMVCPYNE
HHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEECCCCC
NLPLDLHPEYRPVLPGKIEEVLGLTKKNMGDQWKNSPMMWRGTNIIKRNALINLVNLYNK
CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHCC
GVNITDVLEIIKKGLKSPSPVVRITAAWAAGKIKARELKDFILKLLKSEKDKVVENYFKK
CCCHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIKRLNQ
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]