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The map label for this gene is ybaV [C]

Identifier: 220918704

GI number: 220918704

Start: 4031625

End: 4031963

Strand: Direct

Name: ybaV [C]

Synonym: A2cp1_3612

Alternate gene names: 220918704

Gene position: 4031625-4031963 (Clockwise)

Preceding gene: 220918703

Following gene: 220918705

Centisome position: 80.16

GC content: 79.35

Gene sequence:

>339_bases
GTGATCCCGCGGTGGAGGGCGCTCGCGGTCGCGGCCGCGCTGCTCGCCGCGGCCCCGGCGTTCGCGGCGAAGAAGGCGCT
CGCGCAGGGCGAGAAGGTCGACCTGAACCGCGCGCCGGTGGTGGAGCTGATGCGGCTGCCCGGCGTCGGCCAGCAGCGCG
CGCAGGCCATCGTCGCGCACCGCACCCGGCAGCCGTTCCGCCGGGTGGAGGACGTGCTCGCGGTGAAGGGCCTCGGCCCC
GCCTGGCTCGCGAAGGTGCGGGCCAACGTCACCGTGGGCAGCGCCGCCGCGCCCGGGGCGCCTGCCGGGGCGCAGCGGAC
CGCCTCCGCGGGGCGGTGA

Upstream 100 bases:

>100_bases
GCACCGCCACGCTCCAGGTGCGCGAGCCCAAGCCGCCGGCCGAGCGCGGCGGGACCGCCCCGGCGCGGCGCGACGGCTTC
GAGACGGTGGAGGTGCACCC

Downstream 100 bases:

>100_bases
GCGGGCCCGCGACCGGCCGGCCGCGCCCTGCGCCCGGCCGGCCGGTCCGGCATCCGTCCGCGCGGGCTCCGGAATCCTGG
GCGCGCGTCCTCCGCGCTTG

Product: helix-hairpin-helix DNA-binding, class 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MIPRWRALAVAAALLAAAPAFAAKKALAQGEKVDLNRAPVVELMRLPGVGQQRAQAIVAHRTRQPFRRVEDVLAVKGLGP
AWLAKVRANVTVGSAAAPGAPAGAQRTASAGR

Sequences:

>Translated_112_residues
MIPRWRALAVAAALLAAAPAFAAKKALAQGEKVDLNRAPVVELMRLPGVGQQRAQAIVAHRTRQPFRRVEDVLAVKGLGP
AWLAKVRANVTVGSAAAPGAPAGAQRTASAGR
>Mature_112_residues
MIPRWRALAVAAALLAAAPAFAAKKALAQGEKVDLNRAPVVELMRLPGVGQQRAQAIVAHRTRQPFRRVEDVLAVKGLGP
AWLAKVRANVTVGSAAAPGAPAGAQRTASAGR

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11591; Mature: 11591

Theoretical pI: Translated: 12.51; Mature: 12.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPRWRALAVAAALLAAAPAFAAKKALAQGEKVDLNRAPVVELMRLPGVGQQRAQAIVAH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
RTRQPFRRVEDVLAVKGLGPAWLAKVRANVTVGSAAAPGAPAGAQRTASAGR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIPRWRALAVAAALLAAAPAFAAKKALAQGEKVDLNRAPVVELMRLPGVGQQRAQAIVAH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
RTRQPFRRVEDVLAVKGLGPAWLAKVRANVTVGSAAAPGAPAGAQRTASAGR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA