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The map label for this gene is sdhB [H]

Identifier: 220917918

GI number: 220917918

Start: 3117121

End: 3117978

Strand: Direct

Name: sdhB [H]

Synonym: A2cp1_2819

Alternate gene names: 220917918

Gene position: 3117121-3117978 (Clockwise)

Preceding gene: 220917917

Following gene: 220917933

Centisome position: 61.98

GC content: 74.59

Gene sequence:

>858_bases
GTGCGCATCGTCCTCGAGATCTGGCGGCAGCGGGACCCGCGGGCGGAGGGCCGGTTCGTCCGGTACGAGGTCACCGACGT
CAGCGAGCACATGTCCTTCCTGGAGATGCTCGACGTCCTGAACCAGGCGCTGGTGCAGCGCGGCGAGATGCCGGTCGCGT
TCGACTCCGACTGCCGCGAGGGGATCTGCGGGACCTGCGGGTTCCTCGTGAACGGCGAGGCGCACGGGCCGCTCCGGAAC
GCCACCATCTGCCAGACGCACATGCGCCACTTCCACGACGGCGACGTCCTGCGCCTCGAGCCCTGGCGCGCCGCCGCGTT
CCCGGTGGTGCGCGACCTGGTGGTGGACCGGGGCGCGCTCGACCGGATCGTCGCCGCGGGCGGCTACGTCTCGGTGCGGA
CCGGCGGCGCCCCCGACGCGAACGCCCTGCCCGTCCCGAAGACCGACGCCGACCGCGCCATGGAGGCGGCCGCGTGCATC
GGGTGCGGCGCCTGCGTGGCGGCCTGCCCCAACGCCTCGGCGGCGCTGTTCACCGGCGCCAAGATCACGCACCTGTCGCT
GCTGCCGCAGGGCCAGCCCGAGCGCCCGCTGCGCGTGCGCTCCATGGCCGAGCAGGCGCGCGCCGAGGGCTTCGGCCACT
GCACCTCGATCGGCGAGTGCGCGGCGGTGTGTCCGGCGGGGATCCAGCTCGAGGTGATCGCGCGCATGAACCGCGACTTC
CTGCGCGCGGCGTTCTCGCGCGCCGCCGGGGAGCCGCTCACCGTGCTGCCCGTCACGTCGCCGATGCGCCGCTACGAGTC
GCAGCCCCCGGACAAGCGCGAGACGGCGGTCCCCGCGGAGGAGCCGGCGAAGCCCTGA

Upstream 100 bases:

>100_bases
TGGGAGTGGACGGGGCCGGGCGAGGCCCCGGCGCTGCACCGGGAGCCGCTCGCGTTCGAGTACGTCCCGCTCCAGCAGCG
CAGCTACAAGTGAGGGGCGC

Downstream 100 bases:

>100_bases
CCGCGCGCCCCGCTCACCCCAGCCCGGCCACGATCCGCGGCGAGGGATCCTCGGTCAGCTCCTGGTACAGCGCGTCGTAG
GAGAGGCGCATCTGCGCCAG

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRIVLEIWRQRDPRAEGRFVRYEVTDVSEHMSFLEMLDVLNQALVQRGEMPVAFDSDCREGICGTCGFLVNGEAHGPLRN
ATICQTHMRHFHDGDVLRLEPWRAAAFPVVRDLVVDRGALDRIVAAGGYVSVRTGGAPDANALPVPKTDADRAMEAAACI
GCGACVAACPNASAALFTGAKITHLSLLPQGQPERPLRVRSMAEQARAEGFGHCTSIGECAAVCPAGIQLEVIARMNRDF
LRAAFSRAAGEPLTVLPVTSPMRRYESQPPDKRETAVPAEEPAKP

Sequences:

>Translated_285_residues
MRIVLEIWRQRDPRAEGRFVRYEVTDVSEHMSFLEMLDVLNQALVQRGEMPVAFDSDCREGICGTCGFLVNGEAHGPLRN
ATICQTHMRHFHDGDVLRLEPWRAAAFPVVRDLVVDRGALDRIVAAGGYVSVRTGGAPDANALPVPKTDADRAMEAAACI
GCGACVAACPNASAALFTGAKITHLSLLPQGQPERPLRVRSMAEQARAEGFGHCTSIGECAAVCPAGIQLEVIARMNRDF
LRAAFSRAAGEPLTVLPVTSPMRRYESQPPDKRETAVPAEEPAKP
>Mature_285_residues
MRIVLEIWRQRDPRAEGRFVRYEVTDVSEHMSFLEMLDVLNQALVQRGEMPVAFDSDCREGICGTCGFLVNGEAHGPLRN
ATICQTHMRHFHDGDVLRLEPWRAAAFPVVRDLVVDRGALDRIVAAGGYVSVRTGGAPDANALPVPKTDADRAMEAAACI
GCGACVAACPNASAALFTGAKITHLSLLPQGQPERPLRVRSMAEQARAEGFGHCTSIGECAAVCPAGIQLEVIARMNRDF
LRAAFSRAAGEPLTVLPVTSPMRRYESQPPDKRETAVPAEEPAKP

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=250, Percent_Identity=28.8, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 30856; Mature: 30856

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00197 2FE2S_FER_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVLEIWRQRDPRAEGRFVRYEVTDVSEHMSFLEMLDVLNQALVQRGEMPVAFDSDCRE
CCHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHC
GICGTCGFLVNGEAHGPLRNATICQTHMRHFHDGDVLRLEPWRAAAFPVVRDLVVDRGAL
CCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHH
DRIVAAGGYVSVRTGGAPDANALPVPKTDADRAMEAAACIGCGACVAACPNASAALFTGA
HHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
KITHLSLLPQGQPERPLRVRSMAEQARAEGFGHCTSIGECAAVCPAGIQLEVIARMNRDF
EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHHHCHHH
LRAAFSRAAGEPLTVLPVTSPMRRYESQPPDKRETAVPAEEPAKP
HHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRIVLEIWRQRDPRAEGRFVRYEVTDVSEHMSFLEMLDVLNQALVQRGEMPVAFDSDCRE
CCHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHC
GICGTCGFLVNGEAHGPLRNATICQTHMRHFHDGDVLRLEPWRAAAFPVVRDLVVDRGAL
CCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHH
DRIVAAGGYVSVRTGGAPDANALPVPKTDADRAMEAAACIGCGACVAACPNASAALFTGA
HHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
KITHLSLLPQGQPERPLRVRSMAEQARAEGFGHCTSIGECAAVCPAGIQLEVIARMNRDF
EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHHHCHHH
LRAAFSRAAGEPLTVLPVTSPMRRYESQPPDKRETAVPAEEPAKP
HHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]