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The map label for this gene is ygcF [C]

Identifier: 220917757

GI number: 220917757

Start: 2935082

End: 2935714

Strand: Reverse

Name: ygcF [C]

Synonym: A2cp1_2658

Alternate gene names: 220917757

Gene position: 2935714-2935082 (Counterclockwise)

Preceding gene: 220917758

Following gene: 220917756

Centisome position: 58.37

GC content: 73.46

Gene sequence:

>633_bases
ATGCGCGTCACCGAGATCTTCTTCAGCATCCAGGGCGAGGGCTCCCGCGCCGGCCGCCCCTGCGTGTTCGTCCGGTTCAC
CGGCTGCGACCTGCGCTGCGGCTACTGCGACACCGCCTACGCGTTCCACGGCGGCGCGGACATGGATCGGGCCGCGATCC
TCGCGGAGGTGGCCCGCCACCCGGCGCGCTTCGTCTGCCTCACCGGCGGCGAGCCCATGCTGCAGCGCGAGCTGCCCGAC
CTCGCCCGCGAGCTCCTCGCGCGCGGCTACGAGGTGGCGGTGGAGACGCACGGGCAGCGGCCGCTGGACGCGCTGCCGGC
CGAGGCCATCCGGGTGGTGGACGTGAAGACGCCCGGCTCGGGCGAGGTCGCCACCGACCTCGCCTACCTCGATCGGCTGC
AGCCGCACGACGAGGTGAAGTTCGTGGTCTGCTCCGAGGACGACTTCCGCTGGTCGCGCGAGGTGGTGCGACGCCACGCG
CTGGAGGGGAGGGTGCAGGTGCTCTTCTCGCCGGCGTGGGGGCAGGTGGCGCCGCGCGACCTGGTGCGCTGGATGCTCGA
GAGCGGGCTCGACGCGCGCCTCTCGCTGCAGGTCCACAAGGTGGTCTGGGGCCCGGACGTGCACGGCGTGTAG

Upstream 100 bases:

>100_bases
CGGTGGCGGCCGCCGCCGCGCCCGCGCCGGTGGCCGAGTAGGGCCGATCTCGGTTACACCCTGTCCCCGTCCGCCCGGCC
CCGCCGGGCGCCAGGCTCCC

Downstream 100 bases:

>100_bases
GCCCGCGGCGCGCTCGAATACCGGCGCCCGCTCGCGCGTCCAACCGGCGATCCCGGAGTGCCCACCCTCACGCCGCCGCG
CGCACGCCCGCTTCCTTGAC

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MRVTEIFFSIQGEGSRAGRPCVFVRFTGCDLRCGYCDTAYAFHGGADMDRAAILAEVARHPARFVCLTGGEPMLQRELPD
LARELLARGYEVAVETHGQRPLDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHA
LEGRVQVLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHKVVWGPDVHGV

Sequences:

>Translated_210_residues
MRVTEIFFSIQGEGSRAGRPCVFVRFTGCDLRCGYCDTAYAFHGGADMDRAAILAEVARHPARFVCLTGGEPMLQRELPD
LARELLARGYEVAVETHGQRPLDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHA
LEGRVQVLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHKVVWGPDVHGV
>Mature_210_residues
MRVTEIFFSIQGEGSRAGRPCVFVRFTGCDLRCGYCDTAYAFHGGADMDRAAILAEVARHPARFVCLTGGEPMLQRELPD
LARELLARGYEVAVETHGQRPLDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHA
LEGRVQVLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHKVVWGPDVHGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23411; Mature: 23411

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTEIFFSIQGEGSRAGRPCVFVRFTGCDLRCGYCDTAYAFHGGADMDRAAILAEVARH
CCEEEEEEEEECCCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHHC
PARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQRPLDALPAEAIRVVDVKTPGS
CEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC
GEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHALEGRVQVLFSPAWGQVAPRD
CCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHH
LVRWMLESGLDARLSLQVHKVVWGPDVHGV
HHHHHHHCCCCEEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MRVTEIFFSIQGEGSRAGRPCVFVRFTGCDLRCGYCDTAYAFHGGADMDRAAILAEVARH
CCEEEEEEEEECCCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHHC
PARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQRPLDALPAEAIRVVDVKTPGS
CEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC
GEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHALEGRVQVLFSPAWGQVAPRD
CCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHH
LVRWMLESGLDARLSLQVHKVVWGPDVHGV
HHHHHHHCCCCEEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]