Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
---|---|
Accession | NC_011891 |
Length | 5,029,329 |
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The map label for this gene is polA [H]
Identifier: 220917745
GI number: 220917745
Start: 2919962
End: 2922655
Strand: Reverse
Name: polA [H]
Synonym: A2cp1_2646
Alternate gene names: 220917745
Gene position: 2922655-2919962 (Counterclockwise)
Preceding gene: 220917746
Following gene: 220917743
Centisome position: 58.11
GC content: 74.91
Gene sequence:
>2694_bases ATGCCCACCCTGACGCTCATCGACGGCTCGGGCTTCATCTTCCGCGCCTACCACGCGATCCCGCACCTCTCCACCACGAA GGGGATCCCGACCAACGCCGTCTACGGGTTCACCAACATGCTGCTGAAGGCGCTGCGCGAGCACGCGCCCACGCACGTGG CGCTGGTGTTCGACGCGGGGCGCCGCAGCTTCCGGCACGACATCGATCCCGAGTACAAGGCGAACCGCCCCGAGGCGCCC GACGACCTCGCGTCGCAGTTCCCGCTGGTGCGCGACGTGGCCCGCGCGCTCAACGTGCCGGTGATCGAGGAGCCCGGGTT CGAGGCCGACGACATCATCGCCACGCTGGCCGGCCGCGCGCGCGCGGCGGGCTGGGAGGTGGTGGTCGTCACCGGCGACA AGGACTTCGCGCAGCTCGTGGACGGCGGCCTGTCGCTCTACGACCCCATGGCCGAGGCGAGCGGGCGCGGCGGGTGGACC GGCCCGGCCGAGGTCGAGAAGAAGATGGGGGTCCGCCCGGAGCAGGTGGTCGAGTACCAGTCCATCCTGGGCGACAAGAT CGACAACGTGCCCGGGATCGCGGGGGTGGGGGAGGTGACGGCGGCGGCGCTCATCCGCCACTTCGGCACCACCGAGGCGA TGCTGGCGCGGCCCGGGGAGATCCCGGCGGCCGTGTCGCGCGGCGGGGAGAAGCTGCGCGACAAGGTCGTCGCGAACGCC GAGCGCATCCGCACCAACCGCCGGCTGGTCGCGCTGCGGCGAGACCTCGACCTGCCCTTCGCGCCCGAGGCGTTCGGCCG CCGGCCGCCCGATCAGGAGCGGGCCCGCGCGCTGTTCTCCGAGCTGGAGTTCTCGCGGCTGGTGAAGGAGCTCCCGCCGC CGCCGCCCACCGCGCGCGCCGAGACGCCGGAGACGATCGACGGCCGGGCCGCGCTGGACGCCGCGGTGGCGGCGCTGGTC CAGGCCGGCGGTCCGGTCGGGCTCCTGCCGGTGCTGGGCGAGGGGCCGCCGCGCACCGCGCCGCTCGTCGGGCTGGCGTT CGCGGGCGCGGGGCGCGCGTTCTACCTGCCGCTCGGGCACCGCTACCTGGGCGCGCCCGCGCCGCTCGCGCCGGCGGACG TGCGCGAGGGGCTCCGGCCGCTGGTCGAGGCGGCGCTCCCGCTGCACGCCCACGAGCTCAAGGCGGCGGCCCACGCGCTG GCGAGGCTCGGGCTGGCGCGGTCGGGCCCGGGCGAGGACACCGAGCTGATGAGCCGGCTCCTGCTGCCCACCCGGCGCGA GCACGCGCTGGTGGACGTGGCGCGGGAGCGGACCAGCTGCGAGCTGCCGCGCAACCCGGCCGACGGGGCGAAGCGCGGGG CGCCGGGGCTGGAGGGCCTCGAGGTGGAGCGGGTGGCGGCCTGGGCCGGCGCCTGCGCGGCGTCGCTGCCGGACCTGGCC GCGAAGCTCGCCGAGGGCCTGGAGGCGGAGCGCCTGTCACCGCTCTACCGCGAGGTGGAGCGGCCGCTGGTGCCGGTGCT GGTCGAGATGGAGCGGACCGGCATCCTGGTGGACCGCGGCGCGATGGAGGGGATGAGCGCCGAGTTCGGCAGGTCGATGC AGGACCTGGAGGCGCGCATCCACGCGGCCGCCGGGCACCCGTTCAACGTCGCCTCGACGCGCGAGCTGGCGCAGGTGCTG TTCGTGGAGCTGGAGCTGCCGGTGGTGAAGCGGCTCAAGACCGGCCCGTCCACCGACCAGGACGTGCTCGAGAAGCTGGC CGAGCAGCACGCGCTGCCGCGGCTGGTGCTGGAGCACCGCTCGCTCTCCAAGCTGAAGGGCACCTACGTCGACGCGCTCC CGCAGCTGGTGGACCCGGCCGACGGGCGCATCCACACCACGTTCCACCAGGCGGGCGCGGCCACCGGCCGGCTCTCCTCC TCGGATCCGAACCTCCAGAACATCCCGGTCCGCACCGAGCTGTCGCGGCGCATCCGCCAGGCGTTCGTGGCGCCGGCGGG CGCGCGCCTGCTCTCGGCCGACTACTCGCAGATCGAGCTGCGGATCCTGGCGCACTACTCCGACGACCCGGGCCTGCTGC AGGCGTTCCGCGACCGCGAGGACGTGCACACCCGCACCGCGGCGGAGACGTTCGGCGTCCCGCCCGAGCAGGTGACCCCG GACCAGCGGCGCATCGCCAAGGTGCTCAACTTCGGCATCGCCTACGGCCTCTCCGCGTTCGGGCTGTCGCAGCGCCTCGA CCTGCCACCGTCGGAGGCGCAGGGGATCATCGACCGCTACTTCACGCGCTACGCCGGCGTCCGCCGCTACATCGAGTGGG CGGTGGAGGAGGCGCGCGCCAAGGGCGAGTCGCGCACGCTGTTCGGGCGCGCGCGCACCATGCCGGAGATCGGCGCGCGC AACCCGGCGCTCCGCAACGCGGCCGAGCGCACCGCCATCAACACGCCCATCCAGGGCACGGCCGCGGACATCGTGAAGAT CGCCATGATCCGCGTGCACGACGCGCTGGCGCAGGAGCGCCGCGCGGCGCGGCTGCTGCTGCAGGTGCACGACGAGCTGG TGCTGGAGGTGCCGGAGCGGGAGCTGGCGCCGGTCGAGGCGCTGGTGCGCCGCGAGATGGAGGGCGCGGCCCGGCTGAAG GTCCCGCTCGAGGTCCAGGTCGGCCACGGCCAGACCTGGGCCGAGGGGCACTGA
Upstream 100 bases:
>100_bases GCTCCGCTGCGGGCTGCGGTAGCCTCGCGGCGGCGGGATCCGGCCCCGCCGCGCTTTTCCCGCGCCGGCGCGCGCCCGCG CGGCTACCCTTCACCGCGAC
Downstream 100 bases:
>100_bases ACGGCGCGGCGGACGGCGGGCGCTACTCGTCGGCGGCCCGGCGGCGGCCGGGGATGAGCTGCACGGCCTCCTCGCGCGCG GGCTCGCGGAACGCCTCGAT
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MPTLTLIDGSGFIFRAYHAIPHLSTTKGIPTNAVYGFTNMLLKALREHAPTHVALVFDAGRRSFRHDIDPEYKANRPEAP DDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWT GPAEVEKKMGVRPEQVVEYQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVANA ERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVKELPPPPPTARAETPETIDGRAALDAAVAALV QAGGPVGLLPVLGEGPPRTAPLVGLAFAGAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVEAALPLHAHELKAAAHAL ARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVERVAAWAGACAASLPDLA AKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVL FVELELPVVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTP DQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGAR NPALRNAAERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLK VPLEVQVGHGQTWAEGH
Sequences:
>Translated_897_residues MPTLTLIDGSGFIFRAYHAIPHLSTTKGIPTNAVYGFTNMLLKALREHAPTHVALVFDAGRRSFRHDIDPEYKANRPEAP DDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWT GPAEVEKKMGVRPEQVVEYQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVANA ERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVKELPPPPPTARAETPETIDGRAALDAAVAALV QAGGPVGLLPVLGEGPPRTAPLVGLAFAGAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVEAALPLHAHELKAAAHAL ARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVERVAAWAGACAASLPDLA AKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVL FVELELPVVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTP DQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGAR NPALRNAAERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLK VPLEVQVGHGQTWAEGH >Mature_896_residues PTLTLIDGSGFIFRAYHAIPHLSTTKGIPTNAVYGFTNMLLKALREHAPTHVALVFDAGRRSFRHDIDPEYKANRPEAPD DLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTG PAEVEKKMGVRPEQVVEYQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVANAE RIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVKELPPPPPTARAETPETIDGRAALDAAVAALVQ AGGPVGLLPVLGEGPPRTAPLVGLAFAGAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVEAALPLHAHELKAAAHALA RLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVERVAAWAGACAASLPDLAA KLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLF VELELPVVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSS DPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPD QRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARN PALRNAAERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLKV PLEVQVGHGQTWAEGH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=456, Percent_Identity=35.5263157894737, Blast_Score=261, Evalue=2e-69, Organism=Homo sapiens, GI139394648, Length=714, Percent_Identity=27.8711484593838, Blast_Score=225, Evalue=2e-58, Organism=Escherichia coli, GI1790294, Length=928, Percent_Identity=39.7629310344828, Blast_Score=608, Evalue=1e-175, Organism=Escherichia coli, GI226510970, Length=249, Percent_Identity=29.718875502008, Blast_Score=107, Evalue=2e-24, Organism=Caenorhabditis elegans, GI86563272, Length=442, Percent_Identity=28.0542986425339, Blast_Score=172, Evalue=5e-43, Organism=Drosophila melanogaster, GI17933644, Length=602, Percent_Identity=28.9036544850498, Blast_Score=206, Evalue=6e-53,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 97250; Mature: 97119
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLTLIDGSGFIFRAYHAIPHLSTTKGIPTNAVYGFTNMLLKALREHAPTHVALVFDAG CCEEEEECCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC RRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRA CHHHCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH RAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVEYQ HCCCCEEEEEECCHHHHHHHHCCHHHHCCHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH SILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVANA HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHH ERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVKELPPPPPTARA HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ETPETIDGRAALDAAVAALVQAGGPVGLLPVLGEGPPRTAPLVGLAFAGAGRAFYLPLGH CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHEECCCCCEEEEECCC RYLGAPAPLAPADVREGLRPLVEAALPLHAHELKAAAHALARLGLARSGPGEDTELMSRL HHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVERVAAWAGACAASLPDLA HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH AKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARI HHHHHCCCHHHCCHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCHHHCCCHHHHHHHH HAAAGHPFNVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHR HHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH SLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRQ HHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTP HHHCCCCHHHHHCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTAADIVKIAMIRVHDALAQER CCCCCCHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLKVPLEVQVGHGQTWAEGH HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECEEEEEECCCCCCCCCC >Mature Secondary Structure PTLTLIDGSGFIFRAYHAIPHLSTTKGIPTNAVYGFTNMLLKALREHAPTHVALVFDAG CEEEEECCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC RRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRA CHHHCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH RAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVEYQ HCCCCEEEEEECCHHHHHHHHCCHHHHCCHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH SILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVANA HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHH ERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVKELPPPPPTARA HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ETPETIDGRAALDAAVAALVQAGGPVGLLPVLGEGPPRTAPLVGLAFAGAGRAFYLPLGH CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHEECCCCCEEEEECCC RYLGAPAPLAPADVREGLRPLVEAALPLHAHELKAAAHALARLGLARSGPGEDTELMSRL HHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVERVAAWAGACAASLPDLA HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH AKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARI HHHHHCCCHHHCCHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCHHHCCCHHHHHHHH HAAAGHPFNVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHR HHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH SLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRQ HHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTP HHHCCCCHHHHHCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTAADIVKIAMIRVHDALAQER CCCCCCHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLKVPLEVQVGHGQTWAEGH HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]