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The map label for this gene is yhaM [H]

Identifier: 220917738

GI number: 220917738

Start: 2911493

End: 2913079

Strand: Direct

Name: yhaM [H]

Synonym: A2cp1_2639

Alternate gene names: 220917738

Gene position: 2911493-2913079 (Clockwise)

Preceding gene: 220917736

Following gene: 220917739

Centisome position: 57.89

GC content: 73.72

Gene sequence:

>1587_bases
ATGGACAAGATCTGGGCCAAGGACGTCAAGGAGGGAGAGCGCGCCAAGAGCGTGTTCCTCGTCGCCCGCAAGGCGATCCC
CACCGCGAAGAGCGGCAAGACGTACCTCTCCGTCACCTTCCAGGACAAGACCGGCGAGCTCGAGGCGCGCGCCTTCGAGA
AGGTCGAGGAGCTGGCGGCGGCCTTCGAGGAGAAGGATCTCGTCGAGGTGGAGGGCGCCATCGGCGCGTTCCAGGGCAAG
CCGCAGCTGCGCATCGAGGCGCTCGCCAAGGTCGACCCGACCACGCTGGACGCGGCCGAGTTCGTGTGGGCGCCGCCGCC
CGAGCCGAAGAAGCCGGAGAAGTCCGGGCCGGCCGAGGCGGAGTCGGGGCACTGGAACGAGCTGCTCGCGCTGGTGGACT
GCGTCGTCGACCCGCACGTGAAGGACCTCATCAAGGCGTTCGTCGAGGACGACGACGTGGCGGCCCGGCTGCGCCGCGCC
CCCGCCGCGAAGACCGTCCACCACGCCTACCCGGGCGGCCTGCTCGAGCACACCGTCTCCTGCCTCAAGCTGGCGCACCG
GCTCGCCGACCACTTCCCGCAGGTCGATCGCGACCTGCTCGTCGCCGGCGCGTTCTTCCACGACCTCGGCAAGATCCGCG
AGCTGAGCGGCGACCGGAGCACCGAGTACACGGACGAGGGCCGGCTGATCGGGCACCTGGTCATGACCGCCCAGTGGATC
CACGACAAGGCGCGCCGCGTGGGCGCCTCGCGCGACCTCGAGCACCACGTCGTGCACATGGTCCTCTCCCACCACGGGCG
CCTCGAGTACGGCTCGCCCAAGGTGCCGATGACGCTCGAGGCGATGCTCACGCACGCCATCGACGAGATCGACAGCCGGG
TGAACTCCTGGCTCAACCTGATGGGCAAGGACGGCGGCAACCGCCGCTGGACCGACGCGAACAACGTCTACGAGCAGCCG
ATCTGGCGCGGCAGCCTGCCGACCGTGCAGGCGGAGAAGAAGGGACCGGCGCCGGAGCTCCTCACCCCGGTCATCTACGT
GCCGCGCAACGGCGCGAGCGCCGGCGGCGGTGCCCAGCCGCGCCCACCGAAGAAGCCCAGGGATCGCAAGCGCGAGCCGC
GCCCGCAGGGCGGCGCCGCGGAGGCGAAGCCGGCCGAGGGCGCCGGCGAGGCGAAGGCCGAGGGCGCCCCGGCGGCGGCG
CAGGCGCCGCGCCCCGAGGGCCGGCCCGAGCGCCCGGATCGCGGCCAGCGCGAGCACCGCGGCTTCGGCGGCGGCGGCGG
CGGCTTCGGCGACAAGAAGCGCGGCTACACCGGCCCGCGGCTGCCCGGCGACAAGGGACCGCACCGGCCGCCGGAGAAGA
AGAACCTGACGCACAACCCGTTCGCCGCGCTCGCGCAGAAGCTCGAGGACGCCGGGAAGCCGGCCGAGGAGAAGCCGGCC
TCGCCCGCCGAGGCGGAGCAGCAGCAGGCGCCCGCCCCCACGCCCCCCGAGCCGCAGGACCAGGCGGTGGCGGCCCGCGA
GCCCGACGTCGCCCCGGAGCCCGCTCCGGCCGGGACGCCCGCTCCCGAGGACAAGCCGGCGGGGTAG

Upstream 100 bases:

>100_bases
GCACACGCCGGAGCGGCGTCGCGCGGAGGCCGCGGATCGCCCGATTCCGGGCCCAATCCGTGTTGTGTCCGCGCGCGGCC
TGAGCTAGCTTGCGCGCACC

Downstream 100 bases:

>100_bases
TTGTCGTAGAATCGCCTCCTCGCGCCCGGCGCGGCCGCGCGGCCGCCCGCCGGGCGCGCGGGGGAGGCGCACCGGTCCAT
GGTCCCGTTCGGCCGCACGG

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MDKIWAKDVKEGERAKSVFLVARKAIPTAKSGKTYLSVTFQDKTGELEARAFEKVEELAAAFEEKDLVEVEGAIGAFQGK
PQLRIEALAKVDPTTLDAAEFVWAPPPEPKKPEKSGPAEAESGHWNELLALVDCVVDPHVKDLIKAFVEDDDVAARLRRA
PAAKTVHHAYPGGLLEHTVSCLKLAHRLADHFPQVDRDLLVAGAFFHDLGKIRELSGDRSTEYTDEGRLIGHLVMTAQWI
HDKARRVGASRDLEHHVVHMVLSHHGRLEYGSPKVPMTLEAMLTHAIDEIDSRVNSWLNLMGKDGGNRRWTDANNVYEQP
IWRGSLPTVQAEKKGPAPELLTPVIYVPRNGASAGGGAQPRPPKKPRDRKREPRPQGGAAEAKPAEGAGEAKAEGAPAAA
QAPRPEGRPERPDRGQREHRGFGGGGGGFGDKKRGYTGPRLPGDKGPHRPPEKKNLTHNPFAALAQKLEDAGKPAEEKPA
SPAEAEQQQAPAPTPPEPQDQAVAAREPDVAPEPAPAGTPAPEDKPAG

Sequences:

>Translated_528_residues
MDKIWAKDVKEGERAKSVFLVARKAIPTAKSGKTYLSVTFQDKTGELEARAFEKVEELAAAFEEKDLVEVEGAIGAFQGK
PQLRIEALAKVDPTTLDAAEFVWAPPPEPKKPEKSGPAEAESGHWNELLALVDCVVDPHVKDLIKAFVEDDDVAARLRRA
PAAKTVHHAYPGGLLEHTVSCLKLAHRLADHFPQVDRDLLVAGAFFHDLGKIRELSGDRSTEYTDEGRLIGHLVMTAQWI
HDKARRVGASRDLEHHVVHMVLSHHGRLEYGSPKVPMTLEAMLTHAIDEIDSRVNSWLNLMGKDGGNRRWTDANNVYEQP
IWRGSLPTVQAEKKGPAPELLTPVIYVPRNGASAGGGAQPRPPKKPRDRKREPRPQGGAAEAKPAEGAGEAKAEGAPAAA
QAPRPEGRPERPDRGQREHRGFGGGGGGFGDKKRGYTGPRLPGDKGPHRPPEKKNLTHNPFAALAQKLEDAGKPAEEKPA
SPAEAEQQQAPAPTPPEPQDQAVAAREPDVAPEPAPAGTPAPEDKPAG
>Mature_528_residues
MDKIWAKDVKEGERAKSVFLVARKAIPTAKSGKTYLSVTFQDKTGELEARAFEKVEELAAAFEEKDLVEVEGAIGAFQGK
PQLRIEALAKVDPTTLDAAEFVWAPPPEPKKPEKSGPAEAESGHWNELLALVDCVVDPHVKDLIKAFVEDDDVAARLRRA
PAAKTVHHAYPGGLLEHTVSCLKLAHRLADHFPQVDRDLLVAGAFFHDLGKIRELSGDRSTEYTDEGRLIGHLVMTAQWI
HDKARRVGASRDLEHHVVHMVLSHHGRLEYGSPKVPMTLEAMLTHAIDEIDSRVNSWLNLMGKDGGNRRWTDANNVYEQP
IWRGSLPTVQAEKKGPAPELLTPVIYVPRNGASAGGGAQPRPPKKPRDRKREPRPQGGAAEAKPAEGAGEAKAEGAPAAA
QAPRPEGRPERPDRGQREHRGFGGGGGGFGDKKRGYTGPRLPGDKGPHRPPEKKNLTHNPFAALAQKLEDAGKPAEEKPA
SPAEAEQQQAPAPTPPEPQDQAVAAREPDVAPEPAPAGTPAPEDKPAG

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 57087; Mature: 57087

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIWAKDVKEGERAKSVFLVARKAIPTAKSGKTYLSVTFQDKTGELEARAFEKVEELAA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
AFEEKDLVEVEGAIGAFQGKPQLRIEALAKVDPTTLDAAEFVWAPPPEPKKPEKSGPAEA
HHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCC
ESGHWNELLALVDCVVDPHVKDLIKAFVEDDDVAARLRRAPAAKTVHHAYPGGLLEHTVS
CCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
CLKLAHRLADHFPQVDRDLLVAGAFFHDLGKIRELSGDRSTEYTDEGRLIGHLVMTAQWI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
HDKARRVGASRDLEHHVVHMVLSHHGRLEYGSPKVPMTLEAMLTHAIDEIDSRVNSWLNL
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MGKDGGNRRWTDANNVYEQPIWRGSLPTVQAEKKGPAPELLTPVIYVPRNGASAGGGAQP
HCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCC
RPPKKPRDRKREPRPQGGAAEAKPAEGAGEAKAEGAPAAAQAPRPEGRPERPDRGQREHR
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GFGGGGGGFGDKKRGYTGPRLPGDKGPHRPPEKKNLTHNPFAALAQKLEDAGKPAEEKPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCC
SPAEAEQQQAPAPTPPEPQDQAVAAREPDVAPEPAPAGTPAPEDKPAG
CCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKIWAKDVKEGERAKSVFLVARKAIPTAKSGKTYLSVTFQDKTGELEARAFEKVEELAA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
AFEEKDLVEVEGAIGAFQGKPQLRIEALAKVDPTTLDAAEFVWAPPPEPKKPEKSGPAEA
HHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCC
ESGHWNELLALVDCVVDPHVKDLIKAFVEDDDVAARLRRAPAAKTVHHAYPGGLLEHTVS
CCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
CLKLAHRLADHFPQVDRDLLVAGAFFHDLGKIRELSGDRSTEYTDEGRLIGHLVMTAQWI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
HDKARRVGASRDLEHHVVHMVLSHHGRLEYGSPKVPMTLEAMLTHAIDEIDSRVNSWLNL
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MGKDGGNRRWTDANNVYEQPIWRGSLPTVQAEKKGPAPELLTPVIYVPRNGASAGGGAQP
HCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCC
RPPKKPRDRKREPRPQGGAAEAKPAEGAGEAKAEGAPAAAQAPRPEGRPERPDRGQREHR
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GFGGGGGGFGDKKRGYTGPRLPGDKGPHRPPEKKNLTHNPFAALAQKLEDAGKPAEEKPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCC
SPAEAEQQQAPAPTPPEPQDQAVAAREPDVAPEPAPAGTPAPEDKPAG
CCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]