Click here to switch to the map view.

The map label for this gene is ydiB [H]

Identifier: 220917552

GI number: 220917552

Start: 2710065

End: 2710616

Strand: Reverse

Name: ydiB [H]

Synonym: A2cp1_2452

Alternate gene names: 220917552

Gene position: 2710616-2710065 (Counterclockwise)

Preceding gene: 220917553

Following gene: 220917546

Centisome position: 53.9

GC content: 79.35

Gene sequence:

>552_bases
ATGGCGGAGATGAGCGGCGAGCGCTTCACGGCGCGGCGGACCACGCGGTCGGCGGCGGCCACCCGCCGCCTCGGCGCGAG
GCTGGGCGGGCTGCTCCGGCCCGGCGACGTGGTGGCGCTGGAGGGCGACCTCGGGGCCGGCAAGACGCAGCTCGTCCGCG
GCGCCTGCGAGGGCGCGGACGTCCCGCCCGGCGAGGTCTCCAGCCCCACCTTCGCGATCGTCGCCACCTACGCCGGACGC
ATCCCGGTGCACCACGCCGACCTCTACCGGATCGCGGACGAGGACGAGCTGTACGGGACCGGCTTCGGCGACCTGGTGGG
CGGGGAGGGCGCGCTGCTGGTGGAGTGGGCGGACCGCATCCCCGGGGCGCTCCCCGCGGAGCGGCTCACGCTGCGGCTCT
CGCACGACGCCGCGCGGCCGGAGGTCCGGCACCTGGAGCTGGAGGGCGTCGGCGCGCGGCACGCGGCGCTGGCGCAAGCG
CTGGTCGCGCCGCCGAGGCGCGCGCGGCGCCCGGCGCCCCGGACCGCGCGCACGGGCCGACGATCGCGCTGA

Upstream 100 bases:

>100_bases
GGGTCCACGGGCGCGCCGGCGACCTGGTCGCGCGGCGGCTCGGCGAGCGCGGGCTGCTCGCGGGCGATCTGGGCGCGGCC
ATCGGGGAGGTGTGGGCGGA

Downstream 100 bases:

>100_bases
GCGGGCGCGGGCCTCAGTCGAACGCGTGGCAGGCGAGGCAGAGCGGCTTCGGGCTCACGTCCGAGCCGTCCACGAGCACG
TCGCCCTGCTGGTCCTCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAEMSGERFTARRTTRSAAATRRLGARLGGLLRPGDVVALEGDLGAGKTQLVRGACEGADVPPGEVSSPTFAIVATYAGR
IPVHHADLYRIADEDELYGTGFGDLVGGEGALLVEWADRIPGALPAERLTLRLSHDAARPEVRHLELEGVGARHAALAQA
LVAPPRRARRPAPRTARTGRRSR

Sequences:

>Translated_183_residues
MAEMSGERFTARRTTRSAAATRRLGARLGGLLRPGDVVALEGDLGAGKTQLVRGACEGADVPPGEVSSPTFAIVATYAGR
IPVHHADLYRIADEDELYGTGFGDLVGGEGALLVEWADRIPGALPAERLTLRLSHDAARPEVRHLELEGVGARHAALAQA
LVAPPRRARRPAPRTARTGRRSR
>Mature_182_residues
AEMSGERFTARRTTRSAAATRRLGARLGGLLRPGDVVALEGDLGAGKTQLVRGACEGADVPPGEVSSPTFAIVATYAGRI
PVHHADLYRIADEDELYGTGFGDLVGGEGALLVEWADRIPGALPAERLTLRLSHDAARPEVRHLELEGVGARHAALAQAL
VAPPRRARRPAPRTARTGRRSR

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=125, Percent_Identity=36.8, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 19439; Mature: 19308

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEMSGERFTARRTTRSAAATRRLGARLGGLLRPGDVVALEGDLGAGKTQLVRGACEGAD
CCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCC
VPPGEVSSPTFAIVATYAGRIPVHHADLYRIADEDELYGTGFGDLVGGEGALLVEWADRI
CCCCCCCCCCEEEEEECCCCCCCCHHHEEEECCCCCEECCCCCCCCCCCCEEEEEEHHHC
PGALPAERLTLRLSHDAARPEVRHLELEGVGARHAALAQALVAPPRRARRPAPRTARTGR
CCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
RSR
CCC
>Mature Secondary Structure 
AEMSGERFTARRTTRSAAATRRLGARLGGLLRPGDVVALEGDLGAGKTQLVRGACEGAD
CCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCC
VPPGEVSSPTFAIVATYAGRIPVHHADLYRIADEDELYGTGFGDLVGGEGALLVEWADRI
CCCCCCCCCCEEEEEECCCCCCCCHHHEEEECCCCCEECCCCCCCCCCCCEEEEEEHHHC
PGALPAERLTLRLSHDAARPEVRHLELEGVGARHAALAQALVAPPRRARRPAPRTARTGR
CCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
RSR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]