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The map label for this gene is psd

Identifier: 220917546

GI number: 220917546

Start: 2704176

End: 2705024

Strand: Reverse

Name: psd

Synonym: A2cp1_2446

Alternate gene names: 220917546

Gene position: 2705024-2704176 (Counterclockwise)

Preceding gene: 220917552

Following gene: 220917545

Centisome position: 53.78

GC content: 75.5

Gene sequence:

>849_bases
ATGAACGACCGCCTCTTCATCTCCGCCCTGCGGCTCCTGCCCAAGAACGCCCTCTCGCGCGCCGTCGGCGCGCTCACCCG
CTGGCGCGCGCCGGTCCCGGTGCGCGTCGCCGCCATCCGGGCGTTCGCGCGGCGCTACGGGATCGACCTCTCGGAGTGCC
CGGACCTCGACGTCTACCGGACCTTCGGCGAGTTCTTCGCGCGGCCGCTGCGGCCCGGGCTGCGGCCCATCGCGCCCGGG
GAGCGGGTGGTGGCGTCGCCGGTGGACGGGGCGGTCTCGGAGACGGGTCGGGTCGAGGCCGGCCGCTTGGTGCAGGCGAA
GGGCATCGACTACCCGGCCGCCGCGCTGCTGGGCGACGAGGCGCTCGCCGCCCGGTTCGCCGGCGGCGCCTACGCCACCC
TCTATCTCGCGCCGAAGGACTACCACCGCATCCACTTCCCGCTGGGCGGGCGGGTGACCGGCTGGCGCTACGTGCCGGGG
AAGCTCTGGCCGGTGAACCCGGCCTCGGTCCGCACCGTCCGCGGCCTGTTCGCGTTGAACGAGCGGCTCGTGACCGTGCT
GGAGACGCCGCTCGGCGCCTGCGCGGTGGTGGCGGTGGGGGCCACGGTGGTGGGCCGGGTGTGCGCCTACTACGACCCGT
CCATCCCCTTCACCAACCTGCCCGGCGCGGCGCCGCGCCGGCACGACTACGAGACGCCGATCCCGGTGGAGAAGGGGCAG
GAGCTGGGGGCCTTCGAGATGGGCTCCACCGTGATCCTGCTCTTCGAGCCCGGAAAGGCGCGCCTCGACCCGCGGCTCGC
GCCCGGGGTGCGGGTCCGGGTCGGCGAGCCGCTCGGCGGCGCGGCGTAG

Upstream 100 bases:

>100_bases
GAGCCACCTCCGGCGCGAGAGCCTGGCCCGGGGCCGCGCCGGCCGCACCGCGAAAAACGGGGCCCGCCGCGGGCGCGCGC
TGCTAGACTCCGCGCGCTCC

Downstream 100 bases:

>100_bases
GCCGCGGCGCGCCGCCGGCCTGCCACCTCCCCGTGCATCACGCGCGGGGCTCTGGTATCCATGCCGGCGTGAAGATCAAC
GGCGTGAAGGGCATGAACGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNDRLFISALRLLPKNALSRAVGALTRWRAPVPVRVAAIRAFARRYGIDLSECPDLDVYRTFGEFFARPLRPGLRPIAPG
ERVVASPVDGAVSETGRVEAGRLVQAKGIDYPAAALLGDEALAARFAGGAYATLYLAPKDYHRIHFPLGGRVTGWRYVPG
KLWPVNPASVRTVRGLFALNERLVTVLETPLGACAVVAVGATVVGRVCAYYDPSIPFTNLPGAAPRRHDYETPIPVEKGQ
ELGAFEMGSTVILLFEPGKARLDPRLAPGVRVRVGEPLGGAA

Sequences:

>Translated_282_residues
MNDRLFISALRLLPKNALSRAVGALTRWRAPVPVRVAAIRAFARRYGIDLSECPDLDVYRTFGEFFARPLRPGLRPIAPG
ERVVASPVDGAVSETGRVEAGRLVQAKGIDYPAAALLGDEALAARFAGGAYATLYLAPKDYHRIHFPLGGRVTGWRYVPG
KLWPVNPASVRTVRGLFALNERLVTVLETPLGACAVVAVGATVVGRVCAYYDPSIPFTNLPGAAPRRHDYETPIPVEKGQ
ELGAFEMGSTVILLFEPGKARLDPRLAPGVRVRVGEPLGGAA
>Mature_282_residues
MNDRLFISALRLLPKNALSRAVGALTRWRAPVPVRVAAIRAFARRYGIDLSECPDLDVYRTFGEFFARPLRPGLRPIAPG
ERVVASPVDGAVSETGRVEAGRLVQAKGIDYPAAALLGDEALAARFAGGAYATLYLAPKDYHRIHFPLGGRVTGWRYVPG
KLWPVNPASVRTVRGLFALNERLVTVLETPLGACAVVAVGATVVGRVCAYYDPSIPFTNLPGAAPRRHDYETPIPVEKGQ
ELGAFEMGSTVILLFEPGKARLDPRLAPGVRVRVGEPLGGAA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=304, Percent_Identity=32.2368421052632, Blast_Score=145, Evalue=5e-35,
Organism=Escherichia coli, GI1790604, Length=292, Percent_Identity=36.986301369863, Blast_Score=182, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI71980843, Length=258, Percent_Identity=35.2713178294574, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI71980840, Length=249, Percent_Identity=35.7429718875502, Blast_Score=133, Evalue=9e-32,
Organism=Saccharomyces cerevisiae, GI6321609, Length=222, Percent_Identity=30.1801801801802, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=34.7826086956522, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=32.1656050955414, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=32.1656050955414, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=32.1656050955414, Blast_Score=132, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ANAD2 (B8JBF7)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002492850.1
- GeneID:   7300106
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_2446
- HOGENOM:   HBG302256
- ProtClustDB:   CLSK945677
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30316; Mature: 30316

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRLFISALRLLPKNALSRAVGALTRWRAPVPVRVAAIRAFARRYGIDLSECPDLDVYR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHH
TFGEFFARPLRPGLRPIAPGERVVASPVDGAVSETGRVEAGRLVQAKGIDYPAAALLGDE
HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCEEEECCCCCCHHHHHCCH
ALAARFAGGAYATLYLAPKDYHRIHFPLGGRVTGWRYVPGKLWPVNPASVRTVRGLFALN
HHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHH
ERLVTVLETPLGACAVVAVGATVVGRVCAYYDPSIPFTNLPGAAPRRHDYETPIPVEKGQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ELGAFEMGSTVILLFEPGKARLDPRLAPGVRVRVGEPLGGAA
CCCCEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MNDRLFISALRLLPKNALSRAVGALTRWRAPVPVRVAAIRAFARRYGIDLSECPDLDVYR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHH
TFGEFFARPLRPGLRPIAPGERVVASPVDGAVSETGRVEAGRLVQAKGIDYPAAALLGDE
HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCEEEECCCCCCHHHHHCCH
ALAARFAGGAYATLYLAPKDYHRIHFPLGGRVTGWRYVPGKLWPVNPASVRTVRGLFALN
HHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHH
ERLVTVLETPLGACAVVAVGATVVGRVCAYYDPSIPFTNLPGAAPRRHDYETPIPVEKGQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ELGAFEMGSTVILLFEPGKARLDPRLAPGVRVRVGEPLGGAA
CCCCEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA