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The map label for this gene is yhcS [C]

Identifier: 220916837

GI number: 220916837

Start: 1934890

End: 1935795

Strand: Direct

Name: yhcS [C]

Synonym: A2cp1_1733

Alternate gene names: 220916837

Gene position: 1934890-1935795 (Clockwise)

Preceding gene: 220916834

Following gene: 220916839

Centisome position: 38.47

GC content: 78.15

Gene sequence:

>906_bases
ATGGACCTGAACCGGATCGCGGTGTTCGCGCAGGTGGTGGAGGCGGGCAGCTTCACCGCCGCGGCGGCGTCGCTGGGCCT
GCGCAAGTCGTCGGTGAGCCGCGCGGTGGCGGCGCTCGAGGCCGACCTGGGCATCCGCCTGCTGCAGCGGACCACCCGCC
GGCTCAGCCTCACCGACGCGGGCCGCGCCTACTACGAGCGGACCCGCGACGCGCTGGCCGGGCTGCGCGAGGCGAGCGAG
GAGGCGGCGGCGCTCGGCGCGGAGCCGCGGGGGACGGTGCGGGTGACCGCGCCGGTGGACCTGGCGCCCGACCTGGCGCG
GCTGACGGACGCGTTCCTGCGCGCGCACCCGCAGGTGCGCGTGGAGGTGTCGCTCACGGCGCGGTACGTGGACCTCGTGA
AGGAGGGCTTCGACCTGGCCATCCGCGCCGGCGTCCTCGCCGACTCCTCGCTGCTCGCGCGGAAGCTCTCGGACAGCGCC
CTCGCGCTGTTCGCCGCGCCGTCCTACCTGCAGGCGCGCGGGCGGCCGCGGCGCCTCGCCGACCTGGCCGGGCACGACTG
CCTGCTCTACCGCGCCGGCCCCGAGACCGCCGTGTGGCGGCTCACCGGCCGTCGCGGCGAGGAGCAGGTGACGGTGCACG
GGCGCGCCGCCGCCGACGAGTTCGCCTTCGTGCGCGGCATGCTGGTCGCGGGCGCGGGGATCGCCCTGGTGCCCACCGGC
ATGGTGGCCGCCCCCCTGCGCGAGGGCGCGATCGAGCGGGTGTTGCCGCAGTACGTCCGGCGCGGCGGCCCGGTGAGCGT
GGTCTGGCCGAGCCGGCGGTACGAGCCGGTGGCGGTGGCGCGCTTCCGCGACGCGATCGTGGCCGCGCTGGGCGAGCCCG
GCGCCGGGGCGGAGGCGCGCGGCTGA

Upstream 100 bases:

>100_bases
CGGGGTGGCGGTCACGGTGGTCATGGTGCGCAGGCTAGGCCGTTGCGGGAGAGTGGACTAGATAGTGAAGTCGGGAAAGA
CCGATGCGCGAGGAGCAACG

Downstream 100 bases:

>100_bases
GCGACGCCGTCAGGCGGCGGGGCGCCAGGCGCGGTGCGCGAGCGCGACGGTGCCGAGCTGGACGGCCACCACCATGGCCA
CGCACGCGCCCCAGCCGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDAGRAYYERTRDALAGLREASE
EAAALGAEPRGTVRVTAPVDLAPDLARLTDAFLRAHPQVRVEVSLTARYVDLVKEGFDLAIRAGVLADSSLLARKLSDSA
LALFAAPSYLQARGRPRRLADLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAADEFAFVRGMLVAGAGIALVPTG
MVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAALGEPGAGAEARG

Sequences:

>Translated_301_residues
MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDAGRAYYERTRDALAGLREASE
EAAALGAEPRGTVRVTAPVDLAPDLARLTDAFLRAHPQVRVEVSLTARYVDLVKEGFDLAIRAGVLADSSLLARKLSDSA
LALFAAPSYLQARGRPRRLADLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAADEFAFVRGMLVAGAGIALVPTG
MVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAALGEPGAGAEARG
>Mature_301_residues
MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDAGRAYYERTRDALAGLREASE
EAAALGAEPRGTVRVTAPVDLAPDLARLTDAFLRAHPQVRVEVSLTARYVDLVKEGFDLAIRAGVLADSSLLARKLSDSA
LALFAAPSYLQARGRPRRLADLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAADEFAFVRGMLVAGAGIALVPTG
MVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAALGEPGAGAEARG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=35.7142857142857, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1786401, Length=275, Percent_Identity=34.1818181818182, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=35.3146853146853, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.0657439446367, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1789440, Length=278, Percent_Identity=29.136690647482, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=260, Percent_Identity=31.1538461538462, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=29.2253521126761, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790011, Length=302, Percent_Identity=21.8543046357616, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=201, Percent_Identity=30.8457711442786, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=287, Percent_Identity=26.1324041811847, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082132, Length=263, Percent_Identity=25.8555133079848, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=259, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=29.2682926829268, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32014; Mature: 32014

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA
CCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHH
GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLARLTDAFLRAHPQVR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
VEVSLTARYVDLVKEGFDLAIRAGVLADSSLLARKLSDSALALFAAPSYLQARGRPRRLA
EEEEHHHHHHHHHHCCCCCEEHHCHHCCHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHH
DLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAADEFAFVRGMLVAGAGIALVPTG
HHCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCC
MVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAALGEPGAGAEAR
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
G
C
>Mature Secondary Structure
MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA
CCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHH
GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLARLTDAFLRAHPQVR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
VEVSLTARYVDLVKEGFDLAIRAGVLADSSLLARKLSDSALALFAAPSYLQARGRPRRLA
EEEEHHHHHHHHHHCCCCCEEHHCHHCCHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHH
DLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAADEFAFVRGMLVAGAGIALVPTG
HHCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCC
MVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAALGEPGAGAEAR
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]