Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
---|---|
Accession | NC_011891 |
Length | 5,029,329 |
Click here to switch to the map view.
The map label for this gene is yycG [H]
Identifier: 220916365
GI number: 220916365
Start: 1409942
End: 1412464
Strand: Reverse
Name: yycG [H]
Synonym: A2cp1_1259
Alternate gene names: 220916365
Gene position: 1412464-1409942 (Counterclockwise)
Preceding gene: 220916369
Following gene: 220916362
Centisome position: 28.08
GC content: 79.51
Gene sequence:
>2523_bases ATGCTGCGCACCATCCGCTCCCGCCTGTTCCTGCTGGTGGGGCTCGCCTCGCTCGCGTTCGTCGCGCTCGGCGCGCTCGT CTCGGTCCGCTCGCTCCGCGCGCGCGCCGAGGCCGAACAGCTCTCGAACCTGGATGTGGCGCGGACCGCCGCGGCCGCGC TGCGCGCCCAGATCGACGGGGTGGCCCGCGCCAGCGCGGTGCTCGGGCACGCGCTCGACGGCGGCCGGATCCTGGGCGAG GACGCGGCGCACCTGCTCTCGGTGGCCGTGCAGGACTCCGGCGTGGTCCGCGATCTCTCCTGGGTGGCGCCGGACGGCCG GGTGGTCGCGTCCAGCGACGCGCGGCTGCACGAGGTGTCGTTCGCCGACCGCGCCGAGCTGCGCCGCCTGCTCGCCGGCG ACGCGGTGGCGGTGGGGGACCTGGTGCGCAACCCGGCCGACGGCGCGCCGGTGGTGGCGGTCGCGACCGCGGTGCGCGAC GGCGCGGGGCGGCTCTCGGGCGCGCTCCTGGCCGCGGTCGATCCGGAGCGGCTGGCCGCGCGCGTCCTGCCGGCCCGCGA GGGCGAGGGCAGCGTCGGCATCGTGGATCGCGCGGGGCGGCTGGTGGCGCGCGTCCCGGCCATCCCGCTCGCCTGGGACG ACCGCCTGGTGGCGGGGGCGCAGGACCTGGTCCGGGCGGCGCTGGCGGGCGCCGAGGCGACCGGCCCGATGCGTTCCGAG GGTGGCGGCCCGGCGCGGCTCGCGGCGGCGGTGCCGGTGCCGGAGCTGGCGTGGGCGGTGCGCGCGACGCAGCCTCGCGC GGACATGCTCGCGCCCATGCGCCGCGAGCTGGCGATCGGCGTCCTCGGCGCGGGCCTGGTGGCGCTGGTCGCGCTGGGCG CGAGCTGGGCCGTGGGCGCGCACACCTCGCGCGCGCTGCGCCGGCTGGAGCGCCACGCCGCCGCGCTGGGGCGGGGCGAG GCGCCGGAGCCGCTCACCGGGCCGGACGAGGTGGTCCGCCTGGGCGCCGCGTACGCGCAGATGGCCCGGCACCTCGACGC GGTCCGCCGCCGGTTCGAGGCGGCCTTCGCCGAGGCGCCGGTCGGCGTGCTGATCCTGGATCCCGCCGAGCTGCGGGCGC GCTGGGCCAACCCGGCGTACCTCGCGTTCCTCGACGCCCCGTTCCGCGGCGAGGGCGTGCAGGGGCTGCGGCTGGAGGAG TTCCTGCCGCGCGCGCAGGAGGCCGGCCTGGTCGCGCTCCTGCGCGAGGTGGCGGCCGGCGACGTCGCGCACGAGGAGCA GGAGTACCGGTACGACGGGTTCGCCCGGGGCCCGACCTGGTGGCGCTGGTCGGTGCGCGCGGTCGAGTCCGGCGGCGGCA CCCGCGACCTCGTGCTCATGGTCACCGAGGTCACCGAGCAGGTCCGCGGCCGCGAGCAGGTCGAGGCCGACCGGCGCCGG CTGGAGGCGGTGCTGCGGGTGCTGCCGGTGGGCGTGCTCATCGCCGACGCCGGCGGGCAGGTGGTCCAGGCGAACGACGC GGCCCGGCGGATCTGGGGCTCGCGCGCGCCGCTCCGCCCGGGCGCGCTCTACCGGGAGCAGCGCGCGCGGCGGGCCGACT CCGGCGCGCCGCTCGCCGCCGGCGACTGGGCGCTGCAGCGCGCGCTCCGCTCCGGCGAGGCGGTCGGCGGCGAGCTGGTC GAGATCGACCGCTTCGACGGGACGCAGGCGGTGGTCCTGAACGGCGCCGCGCCCATCCGCGACGGCGAGGGGCGCGTGGT CGGCGCCGTCACCACGCTGCTCGACGTGACCGAGCTGCGGCGCGCGGTGCGCAACCGCGACGAGGTCCTGCAGGTGGTCT CGCACGACCTGCGCACGCCGCTGTCCGCCGTGACGCTGGGCGCCGCCGCGCTGACCCGGCTGCCCGACGGCCCGGAGGCG GCCGCGCAGGCCCGGCGCGCCGCCGCGCGGCTCGCCGCCGCCGGCCGCCGCATGAACCGGCTCATCGACGACCTGCTCGA CCTCGAGACGCTGGAGGAGGGCCGCCTGTCGATGCGGCCGGAGCCGTGCGACCCGGCGGATCTGCTGGGCGAGGCGGCCG ACCAGCTCCGCGAGGCCGCGCGGGCGAAGGGGCTCGACCTGTGCCTGTCCGCCGCGCCCGGCCTGCCGCCGGTCGCGTGC GATCGCGACCGCGTGCTGCAGGTGCTCGGGAACGTCGCGTCGAACGCGGTGAAGGCCACCGAGGAGGGCGCGGTCTGCCT CGCCGCCGAGGCGCAGGCGGACGGCGCGGTGATCTTCCGCGTCCGCGACACCGGCCCCGGCATCCCCGACGCGGACCTGC CGCACGTGTTCGACCGCTTCCAGCGCGGCAGCGCCGCGCGCTGGCGCGGCTCGGGCCTGGGGCTCGCCATCGCGCGGGGG CTGGTGGAGGCGCACGGCGGCCGGATCTGGGCGGAGAGCGCGCCCGGGGCCGGCACCACCGTGAGCTTCACCCTGCCCCC CGCGGCCGCGCCGGACGAGGCCGCGCACGCCGCGACCGCCTGA
Upstream 100 bases:
>100_bases GCGGGCGAGCGATCGCGGTCCCCTTCCGTGCGCGGCCGTGCGACGTCGGAATACACCGCCGGCGGCCCTCGTTTGCACCG CCGGAGGAATCCCAGCCCGC
Downstream 100 bases:
>100_bases TCAGGCGCCGCGCGCGCGGGGCCGATGCCCGAGCACCGTGCCGTAGGCCACCCCGGCCACGCCCACCAGCATCCCCGCCA TGCCTGCGGCGCTCACCCGC
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MLRTIRSRLFLLVGLASLAFVALGALVSVRSLRARAEAEQLSNLDVARTAAAALRAQIDGVARASAVLGHALDGGRILGE DAAHLLSVAVQDSGVVRDLSWVAPDGRVVASSDARLHEVSFADRAELRRLLAGDAVAVGDLVRNPADGAPVVAVATAVRD GAGRLSGALLAAVDPERLAARVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSE GGGPARLAAAVPVPELAWAVRATQPRADMLAPMRRELAIGVLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGE APEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAFLDAPFRGEGVQGLRLEE FLPRAQEAGLVALLREVAAGDVAHEEQEYRYDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRR LEAVLRVLPVGVLIADAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELV EIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRRAVRNRDEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEA AAQARRAAARLAAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVAC DRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRFQRGSAARWRGSGLGLAIARG LVEAHGGRIWAESAPGAGTTVSFTLPPAAAPDEAAHAATA
Sequences:
>Translated_840_residues MLRTIRSRLFLLVGLASLAFVALGALVSVRSLRARAEAEQLSNLDVARTAAAALRAQIDGVARASAVLGHALDGGRILGE DAAHLLSVAVQDSGVVRDLSWVAPDGRVVASSDARLHEVSFADRAELRRLLAGDAVAVGDLVRNPADGAPVVAVATAVRD GAGRLSGALLAAVDPERLAARVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSE GGGPARLAAAVPVPELAWAVRATQPRADMLAPMRRELAIGVLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGE APEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAFLDAPFRGEGVQGLRLEE FLPRAQEAGLVALLREVAAGDVAHEEQEYRYDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRR LEAVLRVLPVGVLIADAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELV EIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRRAVRNRDEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEA AAQARRAAARLAAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVAC DRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRFQRGSAARWRGSGLGLAIARG LVEAHGGRIWAESAPGAGTTVSFTLPPAAAPDEAAHAATA >Mature_840_residues MLRTIRSRLFLLVGLASLAFVALGALVSVRSLRARAEAEQLSNLDVARTAAAALRAQIDGVARASAVLGHALDGGRILGE DAAHLLSVAVQDSGVVRDLSWVAPDGRVVASSDARLHEVSFADRAELRRLLAGDAVAVGDLVRNPADGAPVVAVATAVRD GAGRLSGALLAAVDPERLAARVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSE GGGPARLAAAVPVPELAWAVRATQPRADMLAPMRRELAIGVLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGE APEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAFLDAPFRGEGVQGLRLEE FLPRAQEAGLVALLREVAAGDVAHEEQEYRYDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRR LEAVLRVLPVGVLIADAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELV EIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRRAVRNRDEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEA AAQARRAAARLAAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVAC DRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRFQRGSAARWRGSGLGLAIARG LVEAHGGRIWAESAPGAGTTVSFTLPPAAAPDEAAHAATA
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: COG5002
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=233, Percent_Identity=33.9055793991416, Blast_Score=118, Evalue=1e-27, Organism=Escherichia coli, GI48994928, Length=288, Percent_Identity=27.7777777777778, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1789149, Length=241, Percent_Identity=31.9502074688797, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1788713, Length=368, Percent_Identity=26.0869565217391, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI145693157, Length=234, Percent_Identity=32.0512820512821, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=32.3144104803493, Blast_Score=97, Evalue=5e-21, Organism=Escherichia coli, GI1786600, Length=414, Percent_Identity=27.0531400966184, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI1790436, Length=215, Percent_Identity=30.6976744186047, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI87081816, Length=235, Percent_Identity=34.468085106383, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1790346, Length=234, Percent_Identity=28.6324786324786, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI87082128, Length=271, Percent_Identity=27.6752767527675, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1786783, Length=281, Percent_Identity=26.6903914590747, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790861, Length=226, Percent_Identity=29.646017699115, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1788549, Length=263, Percent_Identity=24.7148288973384, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1787374, Length=160, Percent_Identity=36.875, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 88069; Mature: 88069
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRTIRSRLFLLVGLASLAFVALGALVSVRSLRARAEAEQLSNLDVARTAAAALRAQIDG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH VARASAVLGHALDGGRILGEDAAHLLSVAVQDSGVVRDLSWVAPDGRVVASSDARLHEVS HHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEHHHEECCCCCEEECCCCCEECCC FADRAELRRLLAGDAVAVGDLVRNPADGAPVVAVATAVRDGAGRLSGALLAAVDPERLAA HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCCEEEECCHHHHHH RVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSE HHCCCCCCCCCEEEHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC GGGPARLAAAVPVPELAWAVRATQPRADMLAPMRRELAIGVLGAGLVALVALGASWAVGA CCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC HTSRALRRLERHAAALGRGEAPEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAP HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VGVLILDPAELRARWANPAYLAFLDAPFRGEGVQGLRLEEFLPRAQEAGLVALLREVAAG CCEEEECHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHC DVAHEEQEYRYDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRR CHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH LEAVLRVLPVGVLIADAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAA HHHHHHHHHHHEEEECCCCCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC GDWALQRALRSGEAVGGELVEIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELR HHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHH RAVRNRDEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNR HHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVAC HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC DRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRF CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHH QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLPPAAAPDEAAHAATA CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHCCCC >Mature Secondary Structure MLRTIRSRLFLLVGLASLAFVALGALVSVRSLRARAEAEQLSNLDVARTAAAALRAQIDG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH VARASAVLGHALDGGRILGEDAAHLLSVAVQDSGVVRDLSWVAPDGRVVASSDARLHEVS HHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEHHHEECCCCCEEECCCCCEECCC FADRAELRRLLAGDAVAVGDLVRNPADGAPVVAVATAVRDGAGRLSGALLAAVDPERLAA HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCCEEEECCHHHHHH RVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSE HHCCCCCCCCCEEEHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC GGGPARLAAAVPVPELAWAVRATQPRADMLAPMRRELAIGVLGAGLVALVALGASWAVGA CCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC HTSRALRRLERHAAALGRGEAPEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAP HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VGVLILDPAELRARWANPAYLAFLDAPFRGEGVQGLRLEEFLPRAQEAGLVALLREVAAG CCEEEECHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHC DVAHEEQEYRYDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRR CHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH LEAVLRVLPVGVLIADAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAA HHHHHHHHHHHEEEECCCCCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC GDWALQRALRSGEAVGGELVEIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELR HHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHH RAVRNRDEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNR HHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVAC HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC DRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRF CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHH QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLPPAAAPDEAAHAATA CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]