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The map label for this gene is ymdB [C]

Identifier: 220915977

GI number: 220915977

Start: 970059

End: 970592

Strand: Reverse

Name: ymdB [C]

Synonym: A2cp1_0863

Alternate gene names: 220915977

Gene position: 970592-970059 (Counterclockwise)

Preceding gene: 220915979

Following gene: 220915960

Centisome position: 19.3

GC content: 77.34

Gene sequence:

>534_bases
ATGGAACGGACCTGGCTCGACGGCCGCATCGCGCTCGTGCAGGGGGACCTCACGCGCCTGCAGGTGGACGCCATCGTCAA
CGCGGCGAACGCCTCGCTGCTCGGGGGCGGCGGCGTGGACGGCGCCATCCACCGCGCCGCCGGCCCGGAGCTGCGCGAGG
CGTGCCGGGCGCTGGGGGGCGCGCACACCGGCGAAGCGAAGATCACGCCCGGCTTCCGCCTCCCGGCGCGCCACGTGATC
CACGCCGTCGGCCCGGTGTGGCAGGGCGGCGGCGCGGGCGAGGACGCCGCGCTCGCCTCCTGCTACCGCGCCTCGATGCG
GCTCGCCGCGGAGCACGGGCTGCGCTCCATCGCCTTCCCGGCCATCTCCACCGGCGCGTACGGCTTCCCCATCAAGCGGG
CCACGCCCATCGCGGTGGACGAGGTGCGGCGCGCGCTCGAGGCGGGCGGCCCGGTCCGCCGGGCGGTGTTCTGCTGCTTC
TCGCCGGAGGACGCCGCCGCCTACGAGCGCGTCCTCGCGGTCCTGCCCGCGTAG

Upstream 100 bases:

>100_bases
ATTCCGTGCGGCCGTGCTCCGGTGCGCACCTGCGGCCGCGCGGCGCAGGGTTCTCCCCCGCCCGCTTGCCGCGGGCGCGG
CACGTGGCTACGACGGCAGC

Downstream 100 bases:

>100_bases
GCGAGCGCGGCGAGCGCGGCCGCGCCGGCGCCGAGCAGCGCCGCCTCGCGCAGGACGTCGCGGGCCGCCCTCCGCGGCCG
CCGGCCGCGCGCCCACGCCT

Product: Appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MERTWLDGRIALVQGDLTRLQVDAIVNAANASLLGGGGVDGAIHRAAGPELREACRALGGAHTGEAKITPGFRLPARHVI
HAVGPVWQGGGAGEDAALASCYRASMRLAAEHGLRSIAFPAISTGAYGFPIKRATPIAVDEVRRALEAGGPVRRAVFCCF
SPEDAAAYERVLAVLPA

Sequences:

>Translated_177_residues
MERTWLDGRIALVQGDLTRLQVDAIVNAANASLLGGGGVDGAIHRAAGPELREACRALGGAHTGEAKITPGFRLPARHVI
HAVGPVWQGGGAGEDAALASCYRASMRLAAEHGLRSIAFPAISTGAYGFPIKRATPIAVDEVRRALEAGGPVRRAVFCCF
SPEDAAAYERVLAVLPA
>Mature_177_residues
MERTWLDGRIALVQGDLTRLQVDAIVNAANASLLGGGGVDGAIHRAAGPELREACRALGGAHTGEAKITPGFRLPARHVI
HAVGPVWQGGGAGEDAALASCYRASMRLAAEHGLRSIAFPAISTGAYGFPIKRATPIAVDEVRRALEAGGPVRRAVFCCF
SPEDAAAYERVLAVLPA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=51.1494252873563, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI13569840, Length=165, Percent_Identity=52.7272727272727, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI207450721, Length=168, Percent_Identity=38.0952380952381, Blast_Score=123, Evalue=9e-29,
Organism=Homo sapiens, GI8923143, Length=168, Percent_Identity=38.0952380952381, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI154813199, Length=152, Percent_Identity=40.7894736842105, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI226371718, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371716, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371714, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371712, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371710, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371706, Length=161, Percent_Identity=35.4037267080745, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI20336746, Length=179, Percent_Identity=28.4916201117318, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI93141018, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI93141020, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI4758496, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=9e-13,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=50.8771929824561, Blast_Score=161, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17538214, Length=168, Percent_Identity=44.047619047619, Blast_Score=137, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24586353, Length=172, Percent_Identity=32.5581395348837, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18374; Mature: 18374

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTWLDGRIALVQGDLTRLQVDAIVNAANASLLGGGGVDGAIHRAAGPELREACRALGG
CCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCC
AHTGEAKITPGFRLPARHVIHAVGPVWQGGGAGEDAALASCYRASMRLAAEHGLRSIAFP
CCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC
AISTGAYGFPIKRATPIAVDEVRRALEAGGPVRRAVFCCFSPEDAAAYERVLAVLPA
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MERTWLDGRIALVQGDLTRLQVDAIVNAANASLLGGGGVDGAIHRAAGPELREACRALGG
CCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCC
AHTGEAKITPGFRLPARHVIHAVGPVWQGGGAGEDAALASCYRASMRLAAEHGLRSIAFP
CCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC
AISTGAYGFPIKRATPIAVDEVRRALEAGGPVRRAVFCCFSPEDAAAYERVLAVLPA
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]