Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 220915960

GI number: 220915960

Start: 949924

End: 950802

Strand: Reverse

Name: algU [H]

Synonym: A2cp1_0846

Alternate gene names: 220915960

Gene position: 950802-949924 (Counterclockwise)

Preceding gene: 220915977

Following gene: 220915959

Centisome position: 18.91

GC content: 73.49

Gene sequence:

>879_bases
ATGGAAACCAGCGACGCCACCCTGATCGACCGCGCCCGGACCGGCGACCGCCGTGCGCTCGACGAGCTGCTCACGCGCCA
CCAGCGGCGCGTCTACCGCTTCGGCCTGAAGATGTGCCGGGATCCGGAGGACGCGAAGGACATCCTCCAGGAGACGCTGC
TCGCGGCCGCACGCACGGTGAAGGACTTCCGCGGCGCGTCGTCGGTCTCGACGTGGATGTACACGATCGCCCGGAGCTTC
TGCATCAAGAAGCGCCGCCGCTCGAAGTTCGCGCCGGCCGAGGAGACCTCCCTCGACCAGCGCGAGCCGGGGGCCGAGGC
GCGGCAGGTCGCGGACCCCGGGCGCACGCCGGACGAGTCGCTCGCCGGGCGCCAGATCGAGCAGGCCCTGGAGACCGCCA
TCGGGCGCCTCGACCCCATGTACCGCGAGGTGCTGGTGCTGCGGGACGTCGAGGGGCTCTCCGCCCCCGAGGTCGCCGAG
GTGATGGGCCTGAGCGTGGAGGCGGTGAAGAGCCGGCTCCACCGGGCCCGCGTGGCCGTGCGCGAGGCGCTGGTGCCGCT
CCTCGGGATCCCGGAGGCCCCGGCCGCGGCCGCGCCTGAGGCCGCGCCCGCGGCGCGACCGGCCGCGCCGTCCGGTCCCG
ACGTCACCTGCCCGGACATCGTCCAGCTCTTCTCCCGCCACCTCGAGGGCGAGATCAGCGCGAACGTGTGCGCCGACATG
GAGAAGCACCTGGCAGGCTGCCCGGCGTGCCAGTCGCGCTGCGACTCCCTCCAGCGCACCCTGGCGCTCTGCAAGGCCGC
GCCGATGCCCGAGGTGCCGGCGAAGGTGCAGGCGTCCGTGCGCCAGGCGATCAAGAAGTTCGTCGAGCTGCACTCCTGA

Upstream 100 bases:

>100_bases
GGGTGCGCATCACGCTCAGTGAATGGAGGCCGGACCGGACCCGCGACGACCGCGCGCTTGTGAGGGGATCGCGGGTGGAC
TAGGAAGGACGGGAGACACC

Downstream 100 bases:

>100_bases
AGCACGCGCCGCCCCGGCGGCGCGCTCCGCTCGCCGACCGGGAGGCGCCCGGCTCAGGTTGCCCTCCCCCGACCGCCCCT
TCCGGTTTGCGCCTCGGCGG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
METSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVKDFRGASSVSTWMYTIARSF
CIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDESLAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAE
VMGLSVEAVKSRLHRARVAVREALVPLLGIPEAPAAAAPEAAPAARPAAPSGPDVTCPDIVQLFSRHLEGEISANVCADM
EKHLAGCPACQSRCDSLQRTLALCKAAPMPEVPAKVQASVRQAIKKFVELHS

Sequences:

>Translated_292_residues
METSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVKDFRGASSVSTWMYTIARSF
CIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDESLAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAE
VMGLSVEAVKSRLHRARVAVREALVPLLGIPEAPAAAAPEAAPAARPAAPSGPDVTCPDIVQLFSRHLEGEISANVCADM
EKHLAGCPACQSRCDSLQRTLALCKAAPMPEVPAKVQASVRQAIKKFVELHS
>Mature_292_residues
METSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTVKDFRGASSVSTWMYTIARSF
CIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDESLAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAE
VMGLSVEAVKSRLHRARVAVREALVPLLGIPEAPAAAAPEAAPAARPAAPSGPDVTCPDIVQLFSRHLEGEISANVCADM
EKHLAGCPACQSRCDSLQRTLALCKAAPMPEVPAKVQASVRQAIKKFVELHS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=192, Percent_Identity=27.6041666666667, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 31927; Mature: 31927

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTV
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KDFRGASSVSTWMYTIARSFCIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDES
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCHH
LAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAEVMGLSVEAVKSRLHRARVAV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
REALVPLLGIPEAPAAAAPEAAPAARPAAPSGPDVTCPDIVQLFSRHLEGEISANVCADM
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
EKHLAGCPACQSRCDSLQRTLALCKAAPMPEVPAKVQASVRQAIKKFVELHS
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
METSDATLIDRARTGDRRALDELLTRHQRRVYRFGLKMCRDPEDAKDILQETLLAAARTV
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KDFRGASSVSTWMYTIARSFCIKKRRRSKFAPAEETSLDQREPGAEARQVADPGRTPDES
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCHH
LAGRQIEQALETAIGRLDPMYREVLVLRDVEGLSAPEVAEVMGLSVEAVKSRLHRARVAV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
REALVPLLGIPEAPAAAAPEAAPAARPAAPSGPDVTCPDIVQLFSRHLEGEISANVCADM
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
EKHLAGCPACQSRCDSLQRTLALCKAAPMPEVPAKVQASVRQAIKKFVELHS
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]