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The map label for this gene is yfjD [C]

Identifier: 220915944

GI number: 220915944

Start: 927748

End: 929058

Strand: Reverse

Name: yfjD [C]

Synonym: A2cp1_0830

Alternate gene names: 220915944

Gene position: 929058-927748 (Counterclockwise)

Preceding gene: 220915946

Following gene: 220915938

Centisome position: 18.47

GC content: 76.35

Gene sequence:

>1311_bases
GTGGTCGCGAACGGCGTGTTCGCCGGCGCGGAGATCGCGGTCATCGCGATGCGCAAGACGCGGCTCGCCCAGCTGGTCGA
GCAGGGGCGCGCCGCCGCCGGCGCGGTGCTCCGGCTGCGCGACGCCCCCGAGCGCTTCCTCGCCACGGTCCAGGTCGGCA
TCACCGTCATCGGCGCCAGCGCCGCGGCGTTCGGCGGCGCGTCGATCGCCGGCCGCCTCGCCCCGGTCCTCGAGCGGATC
CCGCCGCTCGCGCCGTACGCGCACCAGCTCTCGCTGGCGCTCGTGGTCGCGCTCGTGTCCTTCCTGTCGCTGGTGCTGGG
CGAGCTGGTGCCGAAGTCGCTCGCGCTCCGCGCCCCCGAGCGCTACGCGCTCCTGGTGGGCCGGCCGCTGCTCGGTCTCT
CCCACCTGGTCCGCCCGGTCGTGTGGCTGCTGACGGCCTCGTCCAACCTGCTGCTGCGCCCGTTCGGCGACCGCACCACG
TTCGCCGAGGCGCGGCTGTCCGCGGAGGAGCTGGAGCAGCTCGTGGACGAGGCCGGCCGCGCCGGCGCGCTCGATGCGCC
CACCGCGGAGATCGCCTCGCGCGCGCTCGCGTTCCGCGACCTCACCGCCGGCGACGTGATGGTCCCGCGCAGCCGGGTGA
AGGCGCTGCCCGCCGACGCGGACCAGCAGGAGCTGAAGCGGCTGCTGCTCGAGGAGGGCCGCGCGCGCATGCCGGTGTAC
GACGGCACGCTCGACGACGTGATCGGCTACGTGATGGCGAAGGACCTCGCCGCCATGGCCTGGGAGCGCGAGCTCATCGT
GCTCGCCGACCTGGTGCGGCCGGTGCACTTCGTGCCCGAGGGCGCCAAGGCGGTGCACGTGCTCCGCGACATGCAGCGGC
GGCGCTCGCAGATCGCGGTGGTGGTGGACGAGCACGGCGGCATGGCCGGGATCCTCACGCTGGAGGACCTGGTCGAGGAG
CTGGTCGGCGACATCCTGGGCGAGGCCGAGGAGCCGCAGCCGCTGTTCGAGGTCGAGCCCGGCGGCGCCGCGGTGGTGCG
CGGCGACGCGCCCATCCGCGAGGTGAACCGCGCCCTCCACATCGACCTGCCCGAGGGCGAGGGGTACACCACGGTGGCCG
GCCTGGTCATCGCGGTGGCCGGGGCGATGCCGGAGCGCGGCGCGCGCCTCCGGCTCGCGGACGGCACCGAGGCCGAGGTG
GTGGAGGCCACGCCGCGGGTGGTGCGGCGGGTGCGGCTCGTGCCGCCGCCGCCCGGCGAGGCCGGCGCGGGCGCGAGCGA
GGAGAACGGCGCGGCCGGGCCGGAGGCGTGA

Upstream 100 bases:

>100_bases
CCACGCACGCGAGCGGCGGCGTCCCCGGGGCCGCGGCCATCCGGGGAGGGAGCGCCACCTGTACGACACGGCCGTCGAGC
TCCTGATCGTCCTGGCCCTG

Downstream 100 bases:

>100_bases
CCCGCGCCAGCGGAGCAGCGGAGGACGTGACCCGCGACCCGAAGGTGTTCGCGGCTCACGGGCCGTCGTTCAGCGCCTTC
AGCTCGGGCGTGTCCGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MVANGVFAGAEIAVIAMRKTRLAQLVEQGRAAAGAVLRLRDAPERFLATVQVGITVIGASAAAFGGASIAGRLAPVLERI
PPLAPYAHQLSLALVVALVSFLSLVLGELVPKSLALRAPERYALLVGRPLLGLSHLVRPVVWLLTASSNLLLRPFGDRTT
FAEARLSAEELEQLVDEAGRAGALDAPTAEIASRALAFRDLTAGDVMVPRSRVKALPADADQQELKRLLLEEGRARMPVY
DGTLDDVIGYVMAKDLAAMAWERELIVLADLVRPVHFVPEGAKAVHVLRDMQRRRSQIAVVVDEHGGMAGILTLEDLVEE
LVGDILGEAEEPQPLFEVEPGGAAVVRGDAPIREVNRALHIDLPEGEGYTTVAGLVIAVAGAMPERGARLRLADGTEAEV
VEATPRVVRRVRLVPPPPGEAGAGASEENGAAGPEA

Sequences:

>Translated_436_residues
MVANGVFAGAEIAVIAMRKTRLAQLVEQGRAAAGAVLRLRDAPERFLATVQVGITVIGASAAAFGGASIAGRLAPVLERI
PPLAPYAHQLSLALVVALVSFLSLVLGELVPKSLALRAPERYALLVGRPLLGLSHLVRPVVWLLTASSNLLLRPFGDRTT
FAEARLSAEELEQLVDEAGRAGALDAPTAEIASRALAFRDLTAGDVMVPRSRVKALPADADQQELKRLLLEEGRARMPVY
DGTLDDVIGYVMAKDLAAMAWERELIVLADLVRPVHFVPEGAKAVHVLRDMQRRRSQIAVVVDEHGGMAGILTLEDLVEE
LVGDILGEAEEPQPLFEVEPGGAAVVRGDAPIREVNRALHIDLPEGEGYTTVAGLVIAVAGAMPERGARLRLADGTEAEV
VEATPRVVRRVRLVPPPPGEAGAGASEENGAAGPEA
>Mature_436_residues
MVANGVFAGAEIAVIAMRKTRLAQLVEQGRAAAGAVLRLRDAPERFLATVQVGITVIGASAAAFGGASIAGRLAPVLERI
PPLAPYAHQLSLALVVALVSFLSLVLGELVPKSLALRAPERYALLVGRPLLGLSHLVRPVVWLLTASSNLLLRPFGDRTT
FAEARLSAEELEQLVDEAGRAGALDAPTAEIASRALAFRDLTAGDVMVPRSRVKALPADADQQELKRLLLEEGRARMPVY
DGTLDDVIGYVMAKDLAAMAWERELIVLADLVRPVHFVPEGAKAVHVLRDMQRRRSQIAVVVDEHGGMAGILTLEDLVEE
LVGDILGEAEEPQPLFEVEPGGAAVVRGDAPIREVNRALHIDLPEGEGYTTVAGLVIAVAGAMPERGARLRLADGTEAEV
VEATPRVVRRVRLVPPPPGEAGAGASEENGAAGPEA

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=375, Percent_Identity=27.2, Blast_Score=175, Evalue=7e-44,
Organism=Escherichia coli, GI145693175, Length=421, Percent_Identity=27.3159144893112, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1790664, Length=399, Percent_Identity=26.3157894736842, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1786879, Length=250, Percent_Identity=28.4, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082033, Length=256, Percent_Identity=25.78125, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788119, Length=216, Percent_Identity=27.3148148148148, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46085; Mature: 46085

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVANGVFAGAEIAVIAMRKTRLAQLVEQGRAAAGAVLRLRDAPERFLATVQVGITVIGAS
CCCCCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHEEECCCHHHHHHHHHHHHEEEECC
AAAFGGASIAGRLAPVLERIPPLAPYAHQLSLALVVALVSFLSLVLGELVPKSLALRAPE
HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYALLVGRPLLGLSHLVRPVVWLLTASSNLLLRPFGDRTTFAEARLSAEELEQLVDEAGR
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCC
AGALDAPTAEIASRALAFRDLTAGDVMVPRSRVKALPADADQQELKRLLLEEGRARMPVY
CCCCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
DGTLDDVIGYVMAKDLAAMAWERELIVLADLVRPVHFVPEGAKAVHVLRDMQRRRSQIAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEE
VVDEHGGMAGILTLEDLVEELVGDILGEAEEPQPLFEVEPGGAAVVRGDAPIREVNRALH
EEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHCCCEEE
IDLPEGEGYTTVAGLVIAVAGAMPERGARLRLADGTEAEVVEATPRVVRRVRLVPPPPGE
EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCHHHHHHHCCCCCCCCC
AGAGASEENGAAGPEA
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVANGVFAGAEIAVIAMRKTRLAQLVEQGRAAAGAVLRLRDAPERFLATVQVGITVIGAS
CCCCCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHEEECCCHHHHHHHHHHHHEEEECC
AAAFGGASIAGRLAPVLERIPPLAPYAHQLSLALVVALVSFLSLVLGELVPKSLALRAPE
HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYALLVGRPLLGLSHLVRPVVWLLTASSNLLLRPFGDRTTFAEARLSAEELEQLVDEAGR
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCC
AGALDAPTAEIASRALAFRDLTAGDVMVPRSRVKALPADADQQELKRLLLEEGRARMPVY
CCCCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
DGTLDDVIGYVMAKDLAAMAWERELIVLADLVRPVHFVPEGAKAVHVLRDMQRRRSQIAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEE
VVDEHGGMAGILTLEDLVEELVGDILGEAEEPQPLFEVEPGGAAVVRGDAPIREVNRALH
EEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHCCCEEE
IDLPEGEGYTTVAGLVIAVAGAMPERGARLRLADGTEAEVVEATPRVVRRVRLVPPPPGE
EECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCHHHHHHHCCCCCCCCC
AGAGASEENGAAGPEA
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]