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The map label for this gene is hybB [H]

Identifier: 220915626

GI number: 220915626

Start: 582950

End: 584197

Strand: Reverse

Name: hybB [H]

Synonym: A2cp1_0507

Alternate gene names: 220915626

Gene position: 584197-582950 (Counterclockwise)

Preceding gene: 220915627

Following gene: 220915625

Centisome position: 11.62

GC content: 68.51

Gene sequence:

>1248_bases
ATGAGCGGCCACGACCACCCGCAGGCCATCGGGGGGAAGATGCTCGACCCCCTCATGAAGATCCTGCTCGCCGTCTTCGG
CGTCTCCGCCGTGGTGATGGCGTACCGCTTCGTGATGGGCGTCGGCGCGGTCTCCAACATGACCGACGGCTTCACCTGGG
GCATCTGGGAGCCGATCAACGTCGTCGTCTTCACCGGCATCGGCGCCGGCGCCTACGGCGTCGGGCTCCTCTGCTACCTG
CTCAACAAGGGCCAGTACCACGGCCTGGTGCGGCCGGCGGTGCTGCTCGGCGCCATCGCGTACACCCTGGGCGGCAGCTC
GATCATGATCGCGCTGGGCCGCTACTGGAACGCGGTCACGCTGCCCATCGTCCCGTGGTGGAACCTCAGCTCCGCGCTCC
TCGAGGTCGCCGTCTGCGTGATGATGTACGTGATGGTCCTCTGGATCGAGGTGCTGCCGGCGGTCTTCGACGGCGCCGCC
CAGAGCAAGTCGCCCCGGTGGTCCGCGGTCGGGAAGAAGTGGGGCGCGCGCATGGCGAAGGCGATGCCCTACATCATCGC
GCTCGCCATCCTGCTCCCCACCATGCACCAGAGCTCGCTGGGCGGCCTGTACCTCATCGCCGGCCCGAAGCTCCACCCGC
TCTGGCACACCGCGCTGCTCCCCACCCTCTTCCTCGTCTCCTGCCTGTCCATGGGCTACGGCGCGGTGGTGGTGCTGGTG
AACATCCTGCGGCTCAACTGGAACGCGAAGCAGGACCAGGCCCTGTTCGCCAGCATGTCCAAGGTGAACGCGGGGTTCCT
GCTGCTGTACGTGGTGCTCCGGCTCGGCGACGTCGTCCTGAACGGCAAGCTCCGCTTCCTCGGCGCCGACTTCGCCACCT
TCCTGTTCGTGGTGGAGATGGCCCTGTTCATCGCGCCGGCGGTCATGTTCGTCATGCCCGGCGTGCAGCGGAACCGCGGC
AAGCTGTTCGGCGCCGCGCTCCTGGCCCTGCTCGCCGGCGCCGTCTACCGCGCCGACACGTACATGACCATGTACCGGCC
GGCCGGCTGGACCGCCGACGGCAAGTCCATCGCCGCGGGCTGGGACTACTTCCCGTCGCTCGGCGAGACCGTCGTCACCG
TCGGCATGGCCGCGGTCGGCATGGCCATCTTCATCTTCATCTCCCGCCTGTTCCCCGTCGTCGTCGTCGACCAGGGGAAG
AAGTCCACGATCGGCCGCGGCGAGGTCCGGGCCGCTTCCGGCCACTGA

Upstream 100 bases:

>100_bases
ACGGCGTGACGCCGGTCGCGCTGTACGCGGCGATGGCCTTCGTCATCAACCGCAACAAGAAGAAGGAAAAGGCCGCCGAG
CACGGCGAGGAGGGCAAGCG

Downstream 100 bases:

>100_bases
GGGGTGCCTAAATGAGCAAGCTCATCACCATCGACCCGGTCACGCGCATCGAGGGTCACCTCCGCATCGACGTCGAGGTC
GACGGCGGCGCGGTCAAGAA

Product: hydrogenase 2 b cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSGHDHPQAIGGKMLDPLMKILLAVFGVSAVVMAYRFVMGVGAVSNMTDGFTWGIWEPINVVVFTGIGAGAYGVGLLCYL
LNKGQYHGLVRPAVLLGAIAYTLGGSSIMIALGRYWNAVTLPIVPWWNLSSALLEVAVCVMMYVMVLWIEVLPAVFDGAA
QSKSPRWSAVGKKWGARMAKAMPYIIALAILLPTMHQSSLGGLYLIAGPKLHPLWHTALLPTLFLVSCLSMGYGAVVVLV
NILRLNWNAKQDQALFASMSKVNAGFLLLYVVLRLGDVVLNGKLRFLGADFATFLFVVEMALFIAPAVMFVMPGVQRNRG
KLFGAALLALLAGAVYRADTYMTMYRPAGWTADGKSIAAGWDYFPSLGETVVTVGMAAVGMAIFIFISRLFPVVVVDQGK
KSTIGRGEVRAASGH

Sequences:

>Translated_415_residues
MSGHDHPQAIGGKMLDPLMKILLAVFGVSAVVMAYRFVMGVGAVSNMTDGFTWGIWEPINVVVFTGIGAGAYGVGLLCYL
LNKGQYHGLVRPAVLLGAIAYTLGGSSIMIALGRYWNAVTLPIVPWWNLSSALLEVAVCVMMYVMVLWIEVLPAVFDGAA
QSKSPRWSAVGKKWGARMAKAMPYIIALAILLPTMHQSSLGGLYLIAGPKLHPLWHTALLPTLFLVSCLSMGYGAVVVLV
NILRLNWNAKQDQALFASMSKVNAGFLLLYVVLRLGDVVLNGKLRFLGADFATFLFVVEMALFIAPAVMFVMPGVQRNRG
KLFGAALLALLAGAVYRADTYMTMYRPAGWTADGKSIAAGWDYFPSLGETVVTVGMAAVGMAIFIFISRLFPVVVVDQGK
KSTIGRGEVRAASGH
>Mature_414_residues
SGHDHPQAIGGKMLDPLMKILLAVFGVSAVVMAYRFVMGVGAVSNMTDGFTWGIWEPINVVVFTGIGAGAYGVGLLCYLL
NKGQYHGLVRPAVLLGAIAYTLGGSSIMIALGRYWNAVTLPIVPWWNLSSALLEVAVCVMMYVMVLWIEVLPAVFDGAAQ
SKSPRWSAVGKKWGARMAKAMPYIIALAILLPTMHQSSLGGLYLIAGPKLHPLWHTALLPTLFLVSCLSMGYGAVVVLVN
ILRLNWNAKQDQALFASMSKVNAGFLLLYVVLRLGDVVLNGKLRFLGADFATFLFVVEMALFIAPAVMFVMPGVQRNRGK
LFGAALLALLAGAVYRADTYMTMYRPAGWTADGKSIAAGWDYFPSLGETVVTVGMAAVGMAIFIFISRLFPVVVVDQGKK
STIGRGEVRAASGH

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=413, Percent_Identity=32.9297820823245, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 44586; Mature: 44455

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHDHPQAIGGKMLDPLMKILLAVFGVSAVVMAYRFVMGVGAVSNMTDGFTWGIWEPIN
CCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCEECCCCCCE
VVVFTGIGAGAYGVGLLCYLLNKGQYHGLVRPAVLLGAIAYTLGGSSIMIALGRYWNAVT
EEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEHHCCCCEEE
LPIVPWWNLSSALLEVAVCVMMYVMVLWIEVLPAVFDGAAQSKSPRWSAVGKKWGARMAK
ECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AMPYIIALAILLPTMHQSSLGGLYLIAGPKLHPLWHTALLPTLFLVSCLSMGYGAVVVLV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NILRLNWNAKQDQALFASMSKVNAGFLLLYVVLRLGDVVLNGKLRFLGADFATFLFVVEM
HHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
ALFIAPAVMFVMPGVQRNRGKLFGAALLALLAGAVYRADTYMTMYRPAGWTADGKSIAAG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECC
WDYFPSLGETVVTVGMAAVGMAIFIFISRLFPVVVVDQGKKSTIGRGEVRAASGH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGHDHPQAIGGKMLDPLMKILLAVFGVSAVVMAYRFVMGVGAVSNMTDGFTWGIWEPIN
CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCEECCCCCCE
VVVFTGIGAGAYGVGLLCYLLNKGQYHGLVRPAVLLGAIAYTLGGSSIMIALGRYWNAVT
EEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEHHCCCCEEE
LPIVPWWNLSSALLEVAVCVMMYVMVLWIEVLPAVFDGAAQSKSPRWSAVGKKWGARMAK
ECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AMPYIIALAILLPTMHQSSLGGLYLIAGPKLHPLWHTALLPTLFLVSCLSMGYGAVVVLV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NILRLNWNAKQDQALFASMSKVNAGFLLLYVVLRLGDVVLNGKLRFLGADFATFLFVVEM
HHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
ALFIAPAVMFVMPGVQRNRGKLFGAALLALLAGAVYRADTYMTMYRPAGWTADGKSIAAG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECC
WDYFPSLGETVVTVGMAAVGMAIFIFISRLFPVVVVDQGKKSTIGRGEVRAASGH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]