Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 220915140

GI number: 220915140

Start: 21051

End: 22295

Strand: Reverse

Name: intR [C]

Synonym: A2cp1_0017

Alternate gene names: 220915140

Gene position: 22295-21051 (Counterclockwise)

Preceding gene: 220915142

Following gene: 220915134

Centisome position: 0.44

GC content: 69.16

Gene sequence:

>1245_bases
GTGGGCGAGCACCTCTTCCGGAAGTCGTGCCAGAAGAACGGGTGGTACTACGGCTGGTTCTACGGCCCGGACGGCAAGCG
GGTCACTCGCTCCCTCCGGACGGCCGACCGCCGCATCGCCCGCGACCGCCTCCGCCAGTTCGAGCGGGAGGCCCATGCTT
CGGGTGGTGCGGCCTCGAACGCGGCCCCGCACACCGTAGAGGACACCGTCCGCTTCATCGTGGAGGTTGGCTGCTCGGAC
CGCGCCGAGGGGACGCTGGAGATGTACGCGAAGAAGGGCGGCCATCTGGTCCGCGTCTTCGGCGATCAGCAGGTCCACGC
GCTCTCGCTCGACAAGGTGCAGGACTACATCAACCAGCGGCTGGGTGAGGGAGCGGCCCGAGAGACGGTGCGGAAGGAAC
TCTCGACCCTCCGCGTCGCCCTGGAGACGGCGAAGGCCCGCAAGCTCTACGTGGGCGACCCGCGCTCGATCTTCCCACCG
TTCCGCGTGACGTACCGGCCGCGCGAGCGGCACCTCTCCGTCGAGGAGTTCGGGAAGCTCCTCGCCGTGCTCGACGCGAA
GCGGCGGCGCTGGATCATGGTGGCGGTCTACTCTGGGGCGCGCCGATCCGAGGTCGAGGCGCTGCGGTGGGACACGCACG
TCAACCTGGAGACGGGCTGGCTCGTGCTCCCGGGCACGAAGACCGCGAAGGCGCGGCGCTCGGTTCCGATCCTGCAGCCG
CTGGCCGACGAACTCGCAAGCGACCCGTCGAAGAAGGGCTTCGTCGTGGAGGCGTGGGCGAACGTCGGCCGAGACCTGCG
GATCGCGTGCGCGCACGCGGGCGTGGCCCGCGTGAGCCCGAACGACCTGCGCCGGACCTTCGCGTCGTGGATGAAGCAGC
AGGGCGAGGACTCGGCCGTCGTCGCGAAGCTCCTGGGCCACGCCTCGACGCGCATGGTGGACCTCGTGTACGGCCGCTTG
AACGACGAGAACCTCCGCCGCGCGGTCGCGAAGCTCCCGTCCGTCGCCGTGCCCAGCGTCGGAAGCACATCGGAAGCAGC
ACTGGGTCGACTCGTGGGAGAGGAGGGACTCCTGGGAACCGGAGCGCCTCCCGTTGTGGCGGAGAACCTGCCACACGAAA
ATCAGAAGGCCCGCCAGATCTCGCGATCTGGCGGGCCACGATGGTGTTCGAGCTCGGAAGGAGTGCCTGGGGCCGGAATC
GAACCAGCGACACGGGGATTTTCAGTCCCCTGCTCTACCGACTGA

Upstream 100 bases:

>100_bases
GGCTCATGCAGCAGATCGGTCGCGCACGGCTTGGCGTCCGCGCGGTCCGCGTGGCTGAACGCGATCTCGAAGCCTTCATC
GACGGCAGCATGGAGGACCC

Downstream 100 bases:

>100_bases
GCTACCCAGGCGTTTTCACGGCGCTTGCGGCCGGCAAGGCGCCGGCCGCGGGCAGCCCTTTTACGATCGAACGGGGCCGG
ACGCAAACCGAAAACGTCTA

Product: integrase family protein

Products: NA

Alternate protein names: Site-Specific Recombinase; Integrase Family Protein; Phage Integrase Family Protein; Phage Integrase; Bacteriophage Integrase

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MGEHLFRKSCQKNGWYYGWFYGPDGKRVTRSLRTADRRIARDRLRQFEREAHASGGAASNAAPHTVEDTVRFIVEVGCSD
RAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQRLGEGAARETVRKELSTLRVALETAKARKLYVGDPRSIFPP
FRVTYRPRERHLSVEEFGKLLAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQP
LADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAVVAKLLGHASTRMVDLVYGRL
NDENLRRAVAKLPSVAVPSVGSTSEAALGRLVGEEGLLGTGAPPVVAENLPHENQKARQISRSGGPRWCSSSEGVPGAGI
EPATRGFSVPCSTD

Sequences:

>Translated_414_residues
MGEHLFRKSCQKNGWYYGWFYGPDGKRVTRSLRTADRRIARDRLRQFEREAHASGGAASNAAPHTVEDTVRFIVEVGCSD
RAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQRLGEGAARETVRKELSTLRVALETAKARKLYVGDPRSIFPP
FRVTYRPRERHLSVEEFGKLLAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQP
LADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAVVAKLLGHASTRMVDLVYGRL
NDENLRRAVAKLPSVAVPSVGSTSEAALGRLVGEEGLLGTGAPPVVAENLPHENQKARQISRSGGPRWCSSSEGVPGAGI
EPATRGFSVPCSTD
>Mature_413_residues
GEHLFRKSCQKNGWYYGWFYGPDGKRVTRSLRTADRRIARDRLRQFEREAHASGGAASNAAPHTVEDTVRFIVEVGCSDR
AEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQRLGEGAARETVRKELSTLRVALETAKARKLYVGDPRSIFPPF
RVTYRPRERHLSVEEFGKLLAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQPL
ADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAVVAKLLGHASTRMVDLVYGRLN
DENLRRAVAKLPSVAVPSVGSTSEAALGRLVGEEGLLGTGAPPVVAENLPHENQKARQISRSGGPRWCSSSEGVPGAGIE
PATRGFSVPCSTD

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45611; Mature: 45480

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEHLFRKSCQKNGWYYGWFYGPDGKRVTRSLRTADRRIARDRLRQFEREAHASGGAASN
CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AAPHTVEDTVRFIVEVGCSDRAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQR
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHH
LGEGAARETVRKELSTLRVALETAKARKLYVGDPRSIFPPFRVTYRPRERHLSVEEFGKL
HCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECHHHHCCCHHHHHHH
LAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQP
HHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCEEEECCCCCHHHHCCCCHHHH
LADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAV
HHHHHHCCCCCCCEEEEEHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VAKLLGHASTRMVDLVYGRLNDENLRRAVAKLPSVAVPSVGSTSEAALGRLVGEEGLLGT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
GAPPVVAENLPHENQKARQISRSGGPRWCSSSEGVPGAGIEPATRGFSVPCSTD
CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GEHLFRKSCQKNGWYYGWFYGPDGKRVTRSLRTADRRIARDRLRQFEREAHASGGAASN
CHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AAPHTVEDTVRFIVEVGCSDRAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQR
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHH
LGEGAARETVRKELSTLRVALETAKARKLYVGDPRSIFPPFRVTYRPRERHLSVEEFGKL
HCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECHHHHCCCHHHHHHH
LAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQP
HHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCEEEECCCCCHHHHCCCCHHHH
LADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAV
HHHHHHCCCCCCCEEEEEHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VAKLLGHASTRMVDLVYGRLNDENLRRAVAKLPSVAVPSVGSTSEAALGRLVGEEGLLGT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
GAPPVVAENLPHENQKARQISRSGGPRWCSSSEGVPGAGIEPATRGFSVPCSTD
CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA