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The map label for this gene is ycdC [C]

Identifier: 220914944

GI number: 220914944

Start: 322627

End: 323283

Strand: Reverse

Name: ycdC [C]

Synonym: Mnod_8100

Alternate gene names: 220914944

Gene position: 323283-322627 (Counterclockwise)

Preceding gene: 220914945

Following gene: 220914942

Centisome position: 70.58

GC content: 65.91

Gene sequence:

>657_bases
ATGATCAGCGGCGCACAGACACGGCGGCGGCGCAAGGAGGCGCGGCCCGCGGAGATCACGGCCGCCGCCCTGTCCGTCTT
CGCGGAGAAGGGGTTTGCCGCGAGCCGCTTGGAAGATGTCGCGGAACGGGCGGGCGCGAGCAAGGGGACGATCTATCTCT
ACTTCGACACCAAGGAGGCGTTGTTTGAGGCGGTGGTGCACGAGGCGTTCGCTCCCCTTCTTGACCGCGTCGGGAAGGCG
AAGCGGGACCCTCGTGCCCGCAGCGAGGACCTTCTCCGGCTGGTCATTGAGACGATCTACCGCGATCTCGTCGGAACCGA
CCGTCGGCAGATCCTGCGCATGATGATTGCGGAAGGCACGCGGTTCCCGCACCTCGTCGAGTTCTATCACCGGGAAGCCG
TCAGCCGCGGCAAGGCGTTGCTCGGCGAGATCATCTCGCAGGGGATAGCGCGCGGCGAGTTCGTGGACGGGCCGGCGGCG
CGCTGCCCAGAGGTGGTCATCGGTCCCGCGATTATGGCCGGGGTTTGGAAATTGGTGTTCGAAAGGATCGAACGTCTTGA
TCTCGACCGTTTCATAGCCGCGCACCTGGACCTGGTGCTGAACGGGTTGCGGGCTGGGTCGCCGACGCGGGTGACCGTGC
CGAGCCAGCGAGAATAG

Upstream 100 bases:

>100_bases
CGGCAAGCGCCTTGGCCGATTGCGGCAAACAGCCAAGCGATCACACCGGAGCTGTGGTATTCATTTACGCCATAGACAGA
CCGGGAGATCCTGACGACCT

Downstream 100 bases:

>100_bases
CCGCGCCGCAACAACCGAAGGGCTGTTCGCAAGCCGTCCTTCGTGGCTGAACGTCCAGTCACTTGCCATGAGGAAGCCGC
GCGGAGGCTTTGTCACAGGA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; TetR Family Regulatory Protein; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; TetR Family Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MISGAQTRRRRKEARPAEITAAALSVFAEKGFAASRLEDVAERAGASKGTIYLYFDTKEALFEAVVHEAFAPLLDRVGKA
KRDPRARSEDLLRLVIETIYRDLVGTDRRQILRMMIAEGTRFPHLVEFYHREAVSRGKALLGEIISQGIARGEFVDGPAA
RCPEVVIGPAIMAGVWKLVFERIERLDLDRFIAAHLDLVLNGLRAGSPTRVTVPSQRE

Sequences:

>Translated_218_residues
MISGAQTRRRRKEARPAEITAAALSVFAEKGFAASRLEDVAERAGASKGTIYLYFDTKEALFEAVVHEAFAPLLDRVGKA
KRDPRARSEDLLRLVIETIYRDLVGTDRRQILRMMIAEGTRFPHLVEFYHREAVSRGKALLGEIISQGIARGEFVDGPAA
RCPEVVIGPAIMAGVWKLVFERIERLDLDRFIAAHLDLVLNGLRAGSPTRVTVPSQRE
>Mature_218_residues
MISGAQTRRRRKEARPAEITAAALSVFAEKGFAASRLEDVAERAGASKGTIYLYFDTKEALFEAVVHEAFAPLLDRVGKA
KRDPRARSEDLLRLVIETIYRDLVGTDRRQILRMMIAEGTRFPHLVEFYHREAVSRGKALLGEIISQGIARGEFVDGPAA
RCPEVVIGPAIMAGVWKLVFERIERLDLDRFIAAHLDLVLNGLRAGSPTRVTVPSQRE

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24281; Mature: 24281

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGAQTRRRRKEARPAEITAAALSVFAEKGFAASRLEDVAERAGASKGTIYLYFDTKEA
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCHHH
LFEAVVHEAFAPLLDRVGKAKRDPRARSEDLLRLVIETIYRDLVGTDRRQILRMMIAEGT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
RFPHLVEFYHREAVSRGKALLGEIISQGIARGEFVDGPAARCPEVVIGPAIMAGVWKLVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
ERIERLDLDRFIAAHLDLVLNGLRAGSPTRVTVPSQRE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
>Mature Secondary Structure
MISGAQTRRRRKEARPAEITAAALSVFAEKGFAASRLEDVAERAGASKGTIYLYFDTKEA
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCHHH
LFEAVVHEAFAPLLDRVGKAKRDPRARSEDLLRLVIETIYRDLVGTDRRQILRMMIAEGT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
RFPHLVEFYHREAVSRGKALLGEIISQGIARGEFVDGPAARCPEVVIGPAIMAGVWKLVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
ERIERLDLDRFIAAHLDLVLNGLRAGSPTRVTVPSQRE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA