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The map label for this gene is rfbC [H]

Identifier: 220905523

GI number: 220905523

Start: 2721228

End: 2722463

Strand: Reverse

Name: rfbC [H]

Synonym: Ddes_2262

Alternate gene names: 220905523

Gene position: 2722463-2721228 (Counterclockwise)

Preceding gene: 220905524

Following gene: 220905522

Centisome position: 94.75

GC content: 59.71

Gene sequence:

>1236_bases
ATGAATAACGCTAAAGTCTCCATCATTATTCCTGTCTGGAATCTCTGGGACATGACCGCCGCCTGTCTGCGCTCCCTGGC
CATGCACACACGGGAGGAGAATGTGGAAATAGTGGTGGTGGACAACGGCTCTACCGATGCTACCACCACGGAACTGGAAG
CTTTGGGCCGCGCCTTGTGGGGTGCGGCCTTTTGCCCGGTGCGGCTGACCGCCAATCTGGGATTTGCCGGAGGGTGCAAC
GCAGGGGCTGCCGCTGCCACAGGTGACCTGCTGTTTTTTCTTAATAATGACACAACCGTGACCCCGGGCTGGCTGCCGCC
CCTGCGCGAGGCCCTTGGCCGGCAGTGCATGGGCGCCGTTGGACCGCTTTTGCTTTATCCCAACGGAACCATACAGCATT
GCGGCATTTTTTTTACGCCCTTTCTGCAAGTGGGCCACCTGTATGAGGGTTTTCCCGGTGGGCACCCTGTGCCGCGCAAC
AAAAGGCCTCTTCAGGCCATAACAGGCGCGGCCATGCTGCTGCGCAAAGATGTTTTTTGGGAATGCGGCGGCTTTTTTGA
AAGTTTTCGCAATGGCTTTGAAGATCTGGACCTCTGTTTTGAGTTGCGCGGCAAAGGGTATGCCCTGGCTGTGGAAGGGC
GCAGCGTCATTGTACACCATACCAGCCAGACCCCGGGCCGTTTTGATCATGATAACGCCAATGGAATGCTGTTCTGCCAA
CGGCAGGCACGGCGGCTCAGGCCGGACCTGCACATCCTGGCTGCGCTTGACGGCTACGAGTTGCGGCTCGGCCCCAATCT
CGGGCACTGGCTAGAACTGCCGGAAGCGGTGGAAGAAAAGCGCAACGCGGATTTTGACGCGCGATTCACCGCCAATGAAG
AAACCTGCCGGGCAGAACTGGAGCATGAACCTTTGTGGCGGGGCGGCTGGCACCGGTTAATGGATATGCTTGAGGCCCGT
GGCGACATGACCGCTGCCCTGCTGAGTGCCACCCGTTGCGTCATGTTTTTGGGCGACGAGGTTTCGCGCGAAAAACTGCT
GCATCTTACAGCGGCCGTGGAAGGGCCGGATTACGCGGCTTCGGTGCGGGCAGCCCTGACTGGCTCTGTGGGGGATGACC
TGGCGGGAGCGGCCAAGGCGCGGGTACAGCGTACCCGCCGTGCGGCATACGACATGGGTGACACCCTGCTGGCCGAAGTT
TTCAATCAATGGCTCTTGCGCTATGGGCGGGCATAG

Upstream 100 bases:

>100_bases
GCTTCATATACCCATATTTTCGCCCCGGCCGCACCGGGCTGGGCAGAAAATTTCGTGAACGCGGCCCGCAGCTTTGCCGC
ACGGAACCGGAGAGAATGCC

Downstream 100 bases:

>100_bases
GCGCAGATGCTGTTGCAACGGCATCCGGAAAGTACAAAATTTGTTTTGCATCAGGGCAGACAGCAAGGCCAGAAGCTGGC
CCACTTTTCATGGCTGGGCT

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNNAKVSIIIPVWNLWDMTAACLRSLAMHTREENVEIVVVDNGSTDATTTELEALGRALWGAAFCPVRLTANLGFAGGCN
AGAAAATGDLLFFLNNDTTVTPGWLPPLREALGRQCMGAVGPLLLYPNGTIQHCGIFFTPFLQVGHLYEGFPGGHPVPRN
KRPLQAITGAAMLLRKDVFWECGGFFESFRNGFEDLDLCFELRGKGYALAVEGRSVIVHHTSQTPGRFDHDNANGMLFCQ
RQARRLRPDLHILAALDGYELRLGPNLGHWLELPEAVEEKRNADFDARFTANEETCRAELEHEPLWRGGWHRLMDMLEAR
GDMTAALLSATRCVMFLGDEVSREKLLHLTAAVEGPDYAASVRAALTGSVGDDLAGAAKARVQRTRRAAYDMGDTLLAEV
FNQWLLRYGRA

Sequences:

>Translated_411_residues
MNNAKVSIIIPVWNLWDMTAACLRSLAMHTREENVEIVVVDNGSTDATTTELEALGRALWGAAFCPVRLTANLGFAGGCN
AGAAAATGDLLFFLNNDTTVTPGWLPPLREALGRQCMGAVGPLLLYPNGTIQHCGIFFTPFLQVGHLYEGFPGGHPVPRN
KRPLQAITGAAMLLRKDVFWECGGFFESFRNGFEDLDLCFELRGKGYALAVEGRSVIVHHTSQTPGRFDHDNANGMLFCQ
RQARRLRPDLHILAALDGYELRLGPNLGHWLELPEAVEEKRNADFDARFTANEETCRAELEHEPLWRGGWHRLMDMLEAR
GDMTAALLSATRCVMFLGDEVSREKLLHLTAAVEGPDYAASVRAALTGSVGDDLAGAAKARVQRTRRAAYDMGDTLLAEV
FNQWLLRYGRA
>Mature_411_residues
MNNAKVSIIIPVWNLWDMTAACLRSLAMHTREENVEIVVVDNGSTDATTTELEALGRALWGAAFCPVRLTANLGFAGGCN
AGAAAATGDLLFFLNNDTTVTPGWLPPLREALGRQCMGAVGPLLLYPNGTIQHCGIFFTPFLQVGHLYEGFPGGHPVPRN
KRPLQAITGAAMLLRKDVFWECGGFFESFRNGFEDLDLCFELRGKGYALAVEGRSVIVHHTSQTPGRFDHDNANGMLFCQ
RQARRLRPDLHILAALDGYELRLGPNLGHWLELPEAVEEKRNADFDARFTANEETCRAELEHEPLWRGGWHRLMDMLEAR
GDMTAALLSATRCVMFLGDEVSREKLLHLTAAVEGPDYAASVRAALTGSVGDDLAGAAKARVQRTRRAAYDMGDTLLAEV
FNQWLLRYGRA

Specific function: Involved in O-antigen biosynthesis [H]

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 45241; Mature: 45241

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAKVSIIIPVWNLWDMTAACLRSLAMHTREENVEIVVVDNGSTDATTTELEALGRALW
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
GAAFCPVRLTANLGFAGGCNAGAAAATGDLLFFLNNDTTVTPGWLPPLREALGRQCMGAV
HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
GPLLLYPNGTIQHCGIFFTPFLQVGHLYEGFPGGHPVPRNKRPLQAITGAAMLLRKDVFW
CCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ECGGFFESFRNGFEDLDLCFELRGKGYALAVEGRSVIVHHTSQTPGRFDHDNANGMLFCQ
HHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEE
RQARRLRPDLHILAALDGYELRLGPNLGHWLELPEAVEEKRNADFDARFTANEETCRAEL
HHHHHCCCCEEEEEEECCEEEEECCCCCHHHCCHHHHHHHHCCCCCEEECCCHHHHHHHC
EHEPLWRGGWHRLMDMLEARGDMTAALLSATRCVMFLGDEVSREKLLHLTAAVEGPDYAA
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH
SVRAALTGSVGDDLAGAAKARVQRTRRAAYDMGDTLLAEVFNQWLLRYGRA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNAKVSIIIPVWNLWDMTAACLRSLAMHTREENVEIVVVDNGSTDATTTELEALGRALW
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
GAAFCPVRLTANLGFAGGCNAGAAAATGDLLFFLNNDTTVTPGWLPPLREALGRQCMGAV
HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
GPLLLYPNGTIQHCGIFFTPFLQVGHLYEGFPGGHPVPRNKRPLQAITGAAMLLRKDVFW
CCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ECGGFFESFRNGFEDLDLCFELRGKGYALAVEGRSVIVHHTSQTPGRFDHDNANGMLFCQ
HHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEE
RQARRLRPDLHILAALDGYELRLGPNLGHWLELPEAVEEKRNADFDARFTANEETCRAEL
HHHHHCCCCEEEEEEECCEEEEECCCCCHHHCCHHHHHHHHCCCCCEEECCCHHHHHHHC
EHEPLWRGGWHRLMDMLEARGDMTAALLSATRCVMFLGDEVSREKLLHLTAAVEGPDYAA
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH
SVRAALTGSVGDDLAGAAKARVQRTRRAAYDMGDTLLAEVFNQWLLRYGRA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]